Index by Author

February 2025; 35 (2)
  1. A
  2. B
  3. C
  4. D
  5. E
  6. F
  7. G
  8. H
  9. I
  10. J
  11. K
  12. L
  13. M
  14. N
  15. O
  16. P
  17. Q
  18. R
  19. S
  20. T
  21. U
  22. V
  23. W
  24. X
  25. Y
  26. Z

A

  1. Andersen, Thea O.

    • Probing the eukaryotic microbes of ruminants with a deep-learning classifier and comprehensive protein databases Genome Res. February 2025 35: 368-378; Published in Advance December 27, 2024, doi:10.1101/gr.279825.124

B

  1. Bak, Rasmus O.

    • Characterization of the role of spatial proximity of DNA double-strand breaks in the formation of CRISPR-Cas9-induced large structural variations Genome Res. February 2025 35: 231-241; Published in Advance January 13, 2025, doi:10.1101/gr.278575.123

  2. Baltoumas, Fotis A.

  3. Boddé, Marilou

  4. Botelho, João

    • Timescale and genetic linkage explain the variable impact of defense systems on horizontal gene transfer Genome Res. February 2025 35: 268-278; Published in Advance January 10, 2025, doi:10.1101/gr.279300.124
      OPEN ACCESS ARTICLE

C

  1. Campos-Domínguez, Lucía

  2. Cerca, José

  3. Chan, Candace S.Y.

  4. Chantzi, Nikol

  5. Chao, Kuan-Hao

  6. Chartoumpekis, Dionysios V.

  7. Chauhan, Manish

    • Ultraviolet damage and repair maps in Drosophila reveal the impact of domain-specific changes in nucleosome repeat length on repair efficiency Genome Res. February 2025 35: 257-267; Published in Advance January 6, 2025, doi:10.1101/gr.279605.124

  8. Chen, Shiming

    • Aberrant homeodomain–DNA cooperative dimerization underlies distinct developmental defects in two dominant CRX retinopathy models Genome Res. February 2025 35: 242-256; Published in Advance December 23, 2024, doi:10.1101/gr.279340.124
      OPEN ACCESS ARTICLE

D

  1. Dahl-Jessen, Mikkel

    • Characterization of the role of spatial proximity of DNA double-strand breaks in the formation of CRISPR-Cas9-induced large structural variations Genome Res. February 2025 35: 231-241; Published in Advance January 13, 2025, doi:10.1101/gr.278575.123

G

  1. Georgakopoulos-Soares, Ilias

  2. Goodman, Alan G.

    • Ultraviolet damage and repair maps in Drosophila reveal the impact of domain-specific changes in nucleosome repeat length on repair efficiency Genome Res. February 2025 35: 257-267; Published in Advance January 6, 2025, doi:10.1101/gr.279605.124

H

  1. Harmanci, Arif

  2. Heinz, Jakob M.

  3. Hodson, Christina N.

  4. Hoh, Celine

I

  1. Iranzo, Jaime

    • Timescale and genetic linkage explain the variable impact of defense systems on horizontal gene transfer Genome Res. February 2025 35: 268-278; Published in Advance January 10, 2025, doi:10.1101/gr.279300.124
      OPEN ACCESS ARTICLE

J

  1. Jaron, Kamil S.

  2. Jenike, Katharine M.

  3. Jensen, Uffe Birk

    • Characterization of the role of spatial proximity of DNA double-strand breaks in the formation of CRISPR-Cas9-induced large structural variations Genome Res. February 2025 35: 231-241; Published in Advance January 13, 2025, doi:10.1101/gr.278575.123

  4. Jiang, Xiaoqian

K

  1. Konnaris, Maxwell A.

L

  1. Liu, Yang

    • Timescale and genetic linkage explain the variable impact of defense systems on horizontal gene transfer Genome Res. February 2025 35: 268-278; Published in Advance January 10, 2025, doi:10.1101/gr.279300.124
      OPEN ACCESS ARTICLE

  2. Liu, Zhi-Ping

    • Diffusion-based generation of gene regulatory networks from scRNA-seq data with DigNet Genome Res. February 2025 35: 340-354; Published in Advance December 18, 2024, doi:10.1101/gr.279551.124
      OPEN ACCESS ARTICLE

M

  1. Mao, Alan

  2. Mareboina, Manvita

  3. Miao, Zepu

    • Interactive visualization and interpretation of pangenome graphs by linear reference–based coordinate projection and annotation integration Genome Res. February 2025 35: 296-310; Published in Advance January 13, 2025, doi:10.1101/gr.279461.124
      OPEN ACCESS ARTICLE

  4. Montgomery, Austin

  5. Morledge-Hampton, Benjamin

    • Ultraviolet damage and repair maps in Drosophila reveal the impact of domain-specific changes in nucleosome repeat length on repair efficiency Genome Res. February 2025 35: 257-267; Published in Advance January 6, 2025, doi:10.1101/gr.279605.124

  6. Mouratidis, Ioannis

P

  1. Patsakis, Michail

  2. Pavlopoulos, Georgios A.

  3. Pertea, Mihaela

  4. Pope, Phillip B.

    • Probing the eukaryotic microbes of ruminants with a deep-learning classifier and comprehensive protein databases Genome Res. February 2025 35: 368-378; Published in Advance December 27, 2024, doi:10.1101/gr.279825.124

  5. Provatas, Kimonas

S

  1. Salzberg, Steven L.

  2. Schatz, Michael C.

  3. Selvam, Kathiresan

    • Ultraviolet damage and repair maps in Drosophila reveal the impact of domain-specific changes in nucleosome repeat length on repair efficiency Genome Res. February 2025 35: 257-267; Published in Advance January 6, 2025, doi:10.1101/gr.279605.124

  4. Sha, Congzhou M.

  5. Shumate, Alaina

  6. Stormo, Gary D.

    • Aberrant homeodomain–DNA cooperative dimerization underlies distinct developmental defects in two dominant CRX retinopathy models Genome Res. February 2025 35: 242-256; Published in Advance December 23, 2024, doi:10.1101/gr.279340.124
      OPEN ACCESS ARTICLE

T

  1. Terkelsen, Thorkild

    • Characterization of the role of spatial proximity of DNA double-strand breaks in the formation of CRISPR-Cas9-induced large structural variations Genome Res. February 2025 35: 231-241; Published in Advance January 13, 2025, doi:10.1101/gr.278575.123

  2. Ting, Kai Ming

    • Kernel-bounded clustering for spatial transcriptomics enables scalable discovery of complex spatial domains Genome Res. February 2025 35: 355-367; Published in Advance February 5, 2025, doi:10.1101/gr.278983.124
      OPEN ACCESS ARTICLE

W

  1. Wang, Chuanyuan

    • Diffusion-based generation of gene regulatory networks from scRNA-seq data with DigNet Genome Res. February 2025 35: 340-354; Published in Advance December 18, 2024, doi:10.1101/gr.279551.124
      OPEN ACCESS ARTICLE

  2. Wyrick, John J.

    • Ultraviolet damage and repair maps in Drosophila reveal the impact of domain-specific changes in nucleosome repeat length on repair efficiency Genome Res. February 2025 35: 257-267; Published in Advance January 6, 2025, doi:10.1101/gr.279605.124

Y

  1. Yan, Ming

    • Probing the eukaryotic microbes of ruminants with a deep-learning classifier and comprehensive protein databases Genome Res. February 2025 35: 368-378; Published in Advance December 27, 2024, doi:10.1101/gr.279825.124

  2. Yu, Zhongtang

    • Probing the eukaryotic microbes of ruminants with a deep-learning classifier and comprehensive protein databases Genome Res. February 2025 35: 368-378; Published in Advance December 27, 2024, doi:10.1101/gr.279825.124

  3. Yue, Jia-Xing

    • Interactive visualization and interpretation of pangenome graphs by linear reference–based coordinate projection and annotation integration Genome Res. February 2025 35: 296-310; Published in Advance January 13, 2025, doi:10.1101/gr.279461.124
      OPEN ACCESS ARTICLE

Z

  1. Zhang, Hang

    • Kernel-bounded clustering for spatial transcriptomics enables scalable discovery of complex spatial domains Genome Res. February 2025 35: 355-367; Published in Advance February 5, 2025, doi:10.1101/gr.278983.124
      OPEN ACCESS ARTICLE

  2. Zhang, Jie

    • Kernel-bounded clustering for spatial transcriptomics enables scalable discovery of complex spatial domains Genome Res. February 2025 35: 355-367; Published in Advance February 5, 2025, doi:10.1101/gr.278983.124
      OPEN ACCESS ARTICLE

  3. Zhang, Yi

    • Kernel-bounded clustering for spatial transcriptomics enables scalable discovery of complex spatial domains Genome Res. February 2025 35: 355-367; Published in Advance February 5, 2025, doi:10.1101/gr.278983.124
      OPEN ACCESS ARTICLE

  4. Zhao, Qiuran

    • Kernel-bounded clustering for spatial transcriptomics enables scalable discovery of complex spatial domains Genome Res. February 2025 35: 355-367; Published in Advance February 5, 2025, doi:10.1101/gr.278983.124
      OPEN ACCESS ARTICLE

  5. Zheng, Yiqiao

    • Aberrant homeodomain–DNA cooperative dimerization underlies distinct developmental defects in two dominant CRX retinopathy models Genome Res. February 2025 35: 242-256; Published in Advance December 23, 2024, doi:10.1101/gr.279340.124
      OPEN ACCESS ARTICLE

  6. Zhi, Degui

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