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Research

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  Characteristics, origin, and potential for cancer diagnostics of ultrashort plasma cell-free DNA

  • Irena Hudecova,
  • Christopher G. Smith,
  • Robert Hänsel-Hertsch,
  • Chandra S. Chilamakuri,
  • James A. Morris,
  • Aadhitthya Vijayaraghavan,
  • Katrin Heider,
  • Dineika Chandrananda,
  • Wendy N. Cooper,
  • Davina Gale,
  • Javier Garcia-Corbacho,
  • Simon Pacey,
  • Richard D. Baird,
  • Nitzan Rosenfeld,
  • and Florent Mouliere

  Genome Res. February 2022 32: 215-227; Published in Advance December 20, 2021, doi:10.1101/gr.275691.121
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  Plasma cell-free RNA characteristics in COVID-19 patients

  • Yanqun Wang,
  • Jie Li,
  • Lu Zhang,
  • Hai-Xi Sun,
  • Zhaoyong Zhang,
  • Jinjin Xu,
  • Yonghao Xu,
  • Yu Lin,
  • Airu Zhu,
  • Yuxue Luo,
  • Haibo Zhou,
  • Yan Wu,
  • Shanwen Lin,
  • Yuzhe Sun,
  • Fei Xiao,
  • Ruiying Chen,
  • Liyan Wen,
  • Wei Chen,
  • Fang Li,
  • Rijing Ou,
  • Yanjun Zhang,
  • Tingyou Kuo,
  • Yuming Li,
  • Lingguo Li,
  • Jing Sun,
  • Kun Sun,
  • Zhen Zhuang,
  • Haorong Lu,
  • Zhao Chen,
  • Guoqiang Mai,
  • Jianfen Zhuo,
  • Puyi Qian,
  • Jiayu Chen,
  • Huanming Yang,
  • Jian Wang,
  • Xun Xu,
  • Nanshan Zhong,
  • Jingxian Zhao,
  • Junhua Li,
  • Jincun Zhao,
  • and Xin Jin

  Genome Res. February 2022 32: 228-241; Published in Advance January 21, 2022, doi:10.1101/gr.276175.121
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  Characterization of transcript enrichment and detection bias in single-nucleus RNA-seq for mapping of distinct human adipocyte lineages

  • Anushka Gupta,
  • Farnaz Shamsi,
  • Nicolas Altemose,
  • Gabriel F. Dorlhiac,
  • Aaron M. Cypess,
  • Andrew P. White,
  • Nir Yosef,
  • Mary Elizabeth Patti,
  • Yu-Hua Tseng,
  • and Aaron Streets

  Genome Res. February 2022 32: 242-257; Published in Advance January 18, 2022, doi:10.1101/gr.275509.121
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  Mendelian randomization analyses implicate biogenesis of translation machinery in human aging

  • Sara Javidnia,
  • Stephen Cranwell,
  • Stefanie H. Mueller,
  • Colin Selman,
  • Jennifer M.A. Tullet,
  • Karoline Kuchenbaecker,
  • and Nazif Alic

  Genome Res. February 2022 32: 258-265; Published in Advance January 25, 2022, doi:10.1101/gr.275636.121
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  Gene by environment interaction mouse model reveals a functional role for 5-hydroxymethylcytosine in neurodevelopmental disorders

  • Ligia A. Papale,
  • Andy Madrid,
  • Qi Zhang,
  • Kailei Chen,
  • Lara Sak,
  • Sündüz Keleş,
  • and Reid S. Alisch

  Genome Res. February 2022 32: 266-279; Published in Advance December 23, 2021, doi:10.1101/gr.276137.121
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  Long-range promoter–enhancer contacts are conserved during evolution and contribute to gene expression robustness

  • Alexandre Laverré,
  • Eric Tannier,
  • and Anamaria Necsulea

  Genome Res. February 2022 32: 280-296; Published in Advance December 20, 2021, doi:10.1101/gr.275901.121
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  Limited allele-specific gene expression in highly polyploid sugarcane

  • Gabriel Rodrigues Alves Margarido,
  • Fernando Henrique Correr,
  • Agnelo Furtado,
  • Frederik C. Botha,
  • and Robert James Henry

  Genome Res. February 2022 32: 297-308; Published in Advance December 23, 2021, doi:10.1101/gr.275904.121
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  Resetting of the 24-nt siRNA landscape in rice zygotes

  • Chenxin Li,
  • Jonathan I. Gent,
  • Hengping Xu,
  • Hong Fu,
  • Scott D. Russell,
  • and Venkatesan Sundaresan

  Genome Res. February 2022 32: 309-323; Published in Advance December 23, 2021, doi:10.1101/gr.275981.121
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  Reactivation of transposable elements following hybridization in fission yeast

  • Sergio Tusso,
  • Fang Suo,
  • Yue Liang,
  • Li-Lin Du,
  • and Jochen B.W. Wolf

  Genome Res. February 2022 32: 324-336; Published in Advance December 14, 2021, doi:10.1101/gr.276056.121
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  The asymmetric distribution of RNA polymerase II and nucleosomes on replicated daughter genomes is caused by differences in replication timing between the lagging and the leading strand

  • Rahima Ziane,
  • Alain Camasses,
  • and Marta Radman-Livaja

  Genome Res. February 2022 32: 337-356; Published in Advance January 18, 2022, doi:10.1101/gr.275387.121
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