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Tracing genome size dynamics in sharks and rays with inclusive sequence analysis by the Squalomix Consortium
- First Published June 16, 2026
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A comprehensive single-cell atlas of monoallelic expression across various tissues in zebrafish
- First Published May 28, 2026
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Lignature provides a curated resource of ligand-induced transcriptomic signatures for signaling inference
- First Published April 8, 2026
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Whole-genome sequencing of diverse 351 cultured prokaryotes including as-yet-unsequenced type strains
- First Published April 7, 2026
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Isoform- and pathway-specific regulation of post-transcriptional RNA processing in human cells
- First Published March 26, 2026
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Single-nucleus multiomic profiling of the aging mouse substantia nigra reveals conserved gene alterations linked to Parkinson's disease
- First Published March 4, 2026
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Tetrahymena" > A systems view on DNA damage response kinetics in Tetrahymena
- First Published January 28, 2026
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Cell type–specific gene regulatory atlas prioritizes drug targets and repurposable medicines in Alzheimer's disease
- First Published January 21, 2026
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The SynMall resource for characterizing the functional impact of synonymous variation
- First Published December 17, 2025
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Integrative chromatin state annotation of 234 human ENCODE4 cell types using Segway
- First Published October 6, 2025
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Analyzing the large and complex SFARI autism cohort data using the Genotypes and Phenotypes in Families (GPF) platform
- First Published September 16, 2025
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Quadrupia provides a comprehensive catalog of G-quadruplexes across genomes from the tree of life
- First Published August 26, 2025
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High-quality assembly of the Chinese white truffle genome and recalibrated divergence time estimate provide insight into the evolutionary dynamics of Tuberaceae
- First Published August 21, 2025
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Interspecies systems biology links bacterial metabolic pathways to nematode gene expression, chemotaxis behavior, and survival
- First Published August 5, 2025
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Caenorhabditis elegans" > CGC1, a new reference genome for Caenorhabditis elegans
- First Published July 15, 2025
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A map of enhancer regions in primary human neural progenitor cells using capture STARR-seq
- First Published July 11, 2025
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Multitissue single-nucleus RNA-seq reveals cell type–specific regulatory patterns of alternative polyadenylation in pigs
- First Published June 16, 2025
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Integrated single-cell multiome analysis reveals muscle fiber-type gene regulatory circuitry modulated by endurance exercise
- First Published May 20, 2025
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Charting the regulatory landscape of TP53 on transposable elements in cancer
- First Published May 13, 2025
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Exploring the epigenome profiles of repetitive elements with the WashU Repeat Browser
- First Published February 21, 2025
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Common and specific gene regulatory programs in zebrafish caudal fin regeneration at single-cell resolution
- First Published January 14, 2025
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An integrative TAD catalog in lymphoblastoid cell lines discloses the functional impact of deletions and insertions in human genomes
- First Published December 5, 2024
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Haplotype-resolved genome and population genomics of the threatened garden dormouse in Europe
- First Published November 14, 2024
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High-quality sika deer omics data and integrative analysis reveal genic and cellular regulation of antler regeneration
- First Published November 14, 2024
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Construction and evaluation of a new rat reference genome assembly, GRCr8, from long reads and long-range scaffolding
- First Published November 8, 2024
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Generation and analysis of a mouse multitissue genome annotation atlas
- First Published October 23, 2024
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Dynamic dysregulation of retrotransposons in neurodegenerative diseases at the single-cell level
- First Published October 18, 2024
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PWAS Hub for exploring gene-based associations of common complex diseases
- First Published October 15, 2024
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High-coverage nanopore sequencing of samples from the 1000 Genomes Project to build a comprehensive catalog of human genetic variation
- First Published October 2, 2024
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Full-length RNA transcript sequencing traces brain isoform diversity in house mouse natural populations
- First Published September 17, 2024
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Comprehensive identification of genomic and environmental determinants of phenotypic plasticity in maize
- First Published September 13, 2024
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Allele-specific transcription factor binding across human brain regions offers mechanistic insight into eQTLs
- First Published August 16, 2024
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Visualization and analysis of medically relevant tandem repeats in nanopore sequencing of control cohorts with pathSTR
- First Published August 15, 2024
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Global compositional and functional states of the human gut microbiome in health and disease
- First Published July 22, 2024
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DEAD box RNA helicases are pervasive protein kinase interactors and activators
- First Published July 10, 2024
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Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes
- First Published July 1, 2024
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Wolffia australiana" > Streamlined spatial and environmental expression signatures characterize the minimalist duckweed Wolffia australiana
- First Published July 1, 2024
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A harmonized public resource of deeply sequenced diverse human genomes
- First Published May 15, 2024
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Haplotype-resolved 3D chromatin architecture of the hybrid pig
- First Published March 13, 2024
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Comprehensive assessment of 11 de novo HiFi assemblers on complex eukaryotic genomes and metagenomes
- First Published March 1, 2024
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Pangenome-genotyped structural variation improves molecular phenotype mapping in cattle
- First Published February 14, 2024
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GenomeMUSter mouse genetic variation service enables multitrait, multipopulation data integration and analysis
- First Published January 30, 2024
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The pig pangenome provides insights into the roles of coding structural variations in genetic diversity and adaptation
- First Published November 1, 2023
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Multiscale network modeling reveals the gene regulatory landscape driving cancer prognosis in 32 cancer types
- First Published October 31, 2023
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An organism-wide ATAC-seq peak catalog for the bovine and its use to identify regulatory variants
- First Published September 26, 2023
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Genetic features and genomic targets of human KRAB-zinc finger proteins
- First Published September 20, 2023
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Single-nucleus transcriptomic mapping uncovers targets for traumatic brain injury
- First Published September 20, 2023
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Acomys) ear" > Spatial transcriptomics reveals asymmetric cellular responses to injury in the regenerating spiny mouse (Acomys) ear
- First Published September 19, 2023
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The fine-scale recombination rate variation and associations with genomic features in a butterfly
- First Published June 12, 2023
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Brassica napus using a pooled CRISPR library" > Genome-scale targeted mutagenesis in Brassica napus using a pooled CRISPR library
- First Published June 8, 2023
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Discordant calls across genotype discovery approaches elucidate variants with systematic errors
- First Published May 30, 2023
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Comparing genomic and epigenomic features across species using the WashU Comparative Epigenome Browser
- First Published May 8, 2023
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A single-cell transcriptome atlas of the maturing zebrafish telencephalon
- First Published April 18, 2023
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A sheep pangenome reveals the spectrum of structural variations and their effects on tail phenotypes
- First Published April 3, 2023
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Genome-wide identification of tandem repeats associated with splicing variation across 49 tissues in humans
- First Published March 27, 2023
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Complete sequencing of a cynomolgus macaque major histocompatibility complex haplotype
- First Published February 28, 2023
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The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond
- First Published February 24, 2023
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A temporal in vivo catalog of chromatin accessibility and expression profiles in pineoblastoma reveals a prevalent role for repressor elements
- First Published January 17, 2023
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Hydra genome reveals conserved regulators of cell state" > A chromosome-scale epigenetic map of the Hydra genome reveals conserved regulators of cell state
- First Published January 13, 2023
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Dynamic regulation of gonadal transposon control across the lifespan of the naturally short-lived African turquoise killifish
- First Published December 28, 2022
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A high-resolution map of small-scale inversions in the gibbon genome
- First Published September 30, 2022
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The western redcedar genome reveals low genetic diversity in a self-compatible conifer
- First Published September 15, 2022
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dbEmbryo multi-omics database for analyses of synergistic regulation in early mammalian embryo development
- First Published August 17, 2022
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KCNQ4" > Proactive functional classification of all possible missense single-nucleotide variants in KCNQ4
- First Published June 27, 2022
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Precision environmental health monitoring by longitudinal exposome and multi-omics profiling
- First Published June 6, 2022
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cis-regulatory elements, tissue-specific expression, and alternative promoters in zebrafish" > Epigenomic analysis reveals prevalent contribution of transposable elements to cis-regulatory elements, tissue-specific expression, and alternative promoters in zebrafish
- First Published June 1, 2022
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Native RNA sequencing in fission yeast reveals frequent alternative splicing isoforms
- First Published May 26, 2022
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Mitochondrial DNA variation across 56,434 individuals in gnomAD
- First Published January 24, 2022
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Zebrafish transposable elements show extensive diversification in age, genomic distribution, and developmental expression
- First Published January 5, 2022
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Anopheles coluzzii" > Transposable element variants and their potential adaptive impact in urban populations of the malaria vector Anopheles coluzzii
- First Published December 29, 2021
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Integration of high-resolution promoter profiling assays reveals novel, cell type–specific transcription start sites across 115 human cell and tissue types
- First Published December 23, 2021
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RefSeq Functional Elements as experimentally assayed nongenic reference standards and functional interactions in human and mouse
- First Published December 7, 2021
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Cryptosporidium genome sequences reveal expanded transporter repertoire and duplication of entire chromosome ends including subtelomeric regions" > Long-read assembly and comparative evidence-based reanalysis of Cryptosporidium genome sequences reveal expanded transporter repertoire and duplication of entire chromosome ends including subtelomeric regions
- First Published November 11, 2021
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A ChIP-exo screen of 887 Protein Capture Reagents Program transcription factor antibodies in human cells
- First Published August 23, 2021
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Trypanosoma brucei chromatin factors identifies novel protein interaction networks associated with sites of transcription initiation and termination" > A systematic analysis of Trypanosoma brucei chromatin factors identifies novel protein interaction networks associated with sites of transcription initiation and termination
- First Published August 18, 2021
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Drosophila ovaries" > A single-cell atlas reveals unanticipated cell type complexity in Drosophila ovaries
- First Published August 13, 2021
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Small RNA expression and miRNA modification dynamics in human oocytes and early embryos
- First Published August 2, 2021
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Global patterns of enhancer activity during sea urchin embryogenesis assessed by eRNA profiling
- First Published July 30, 2021
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Dictyostelium development" > Transcriptional milestones in Dictyostelium development
- First Published June 28, 2021
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Long-read RNA sequencing reveals widespread sex-specific alternative splicing in threespine stickleback fish
- First Published June 15, 2021
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Drosophila brain on cocaine at single-cell resolution" > The Drosophila brain on cocaine at single-cell resolution
- First Published May 25, 2021
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Caenorhabditis elegans nematodes" > Comprehensive characterization of tissue-specific chromatin accessibility in L2 Caenorhabditis elegans nematodes
- First Published April 22, 2021
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Modeling transcriptional regulation of model species with deep learning
- First Published April 22, 2021