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Research

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  A genome-wide analysis of common fragile sites: What features determine chromosomal instability in the human genome?

  • Arkarachai Fungtammasan,
  • Erin Walsh,
  • Francesca Chiaromonte,
  • Kristin A. Eckert,
  • and Kateryna D. Makova

  Genome Res. June 2012 22: 993-1005; Published in Advance March 28, 2012, doi:10.1101/gr.134395.111
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  BRAF^V600E remodels the melanocyte transcriptome and induces BANCR to regulate melanoma cell migration

  • Ross J. Flockhart,
  • Dan E. Webster,
  • Kun Qu,
  • Nicholas Mascarenhas,
  • Joanna Kovalski,
  • Markus Kretz,
  • and Paul A. Khavari

  Genome Res. June 2012 22: 1006-1014; Published in Advance May 11, 2012, doi:10.1101/gr.140061.112
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  Differential DNase I hypersensitivity reveals factor-dependent chromatin dynamics

  • Housheng Hansen He,
  • Clifford A. Meyer,
  • Mei Wei Chen,
  • V. Craig Jordan,
  • Myles Brown,
  • and X. Shirley Liu

  Genome Res. June 2012 22: 1015-1025; Published in Advance April 16, 2012, doi:10.1101/gr.133280.111
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  H2B monoubiquitylation is a 5′-enriched active transcription mark and correlates with exon–intron structure in human cells

  • Inkyung Jung,
  • Seung-Kyoon Kim,
  • Mirang Kim,
  • Yong-Mahn Han,
  • Yong Sung Kim,
  • Dongsup Kim,
  • and Daeyoup Lee

  Genome Res. June 2012 22: 1026-1035; Published in Advance March 15, 2012, doi:10.1101/gr.120634.111
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  The evolution of African great ape subtelomeric heterochromatin and the fusion of human chromosome 2

  • Mario Ventura,
  • Claudia R. Catacchio,
  • Saba Sajjadian,
  • Laura Vives,
  • Peter H. Sudmant,
  • Tomas Marques-Bonet,
  • Tina A. Graves,
  • Richard K. Wilson,
  • and Evan E. Eichler

  Genome Res. June 2012 22: 1036-1049; Published in Advance March 14, 2012, doi:10.1101/gr.136556.111
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  Primate segmental duplication creates novel promoters for the LRRC37 gene family within the 17q21.31 inversion polymorphism region

  • Cemalettin Bekpen,
  • Ibrahim Tastekin,
  • Priscillia Siswara,
  • Cezmi A. Akdis,
  • and Evan E. Eichler

  Genome Res. June 2012 22: 1050-1058; Published in Advance March 14, 2012, doi:10.1101/gr.134098.111
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  Coding exons function as tissue-specific enhancers of nearby genes

  • Ramon Y. Birnbaum,
  • E. Josephine Clowney,
  • Orly Agamy,
  • Mee J. Kim,
  • Jingjing Zhao,
  • Takayuki Yamanaka,
  • Zachary Pappalardo,
  • Shoa L. Clarke,
  • Aaron M. Wenger,
  • Loan Nguyen,
  • Fiorella Gurrieri,
  • David B. Everman,
  • Charles E. Schwartz,
  • Ohad S. Birk,
  • Gill Bejerano,
  • Stavros Lomvardas,
  • and Nadav Ahituv

  Genome Res. June 2012 22: 1059-1068; Published in Advance March 22, 2012, doi:10.1101/gr.133546.111
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  Chromatin state signatures associated with tissue-specific gene expression and enhancer activity in the embryonic limb

  • Justin Cotney,
  • Jing Leng,
  • Sunghee Oh,
  • Laura E. DeMare,
  • Steven K. Reilly,
  • Mark B. Gerstein,
  • and James P. Noonan

  Genome Res. June 2012 22: 1069-1080; Published in Advance March 15, 2012, doi:10.1101/gr.129817.111
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  Genome-wide phosphoacetylation of histone H3 at Drosophila enhancers and promoters

  • Wendy A. Kellner,
  • Edward Ramos,
  • Kevin Van Bortle,
  • Naomi Takenaka,
  • and Victor G. Corces

  Genome Res. June 2012 22: 1081-1088; Published in Advance April 16, 2012, doi:10.1101/gr.136929.111
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  A systematic study of gene expression variation at single-nucleotide resolution reveals widespread regulatory roles for uAUGs

  • Yue Yun,
  • T.M. Ayodele Adesanya,
  • and Robi D. Mitra

  Genome Res. June 2012 22: 1089-1097; Published in Advance March 27, 2012, doi:10.1101/gr.117366.110
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  Unusual combinatorial involvement of poly-A/T tracts in organizing genes and chromatin in Dictyostelium

  • Gue Su Chang,
  • Angelika A. Noegel,
  • Travis N. Mavrich,
  • Rolf Müller,
  • Lynn Tomsho,
  • Elissa Ward,
  • Marius Felder,
  • Cizhong Jiang,
  • Ludwig Eichinger,
  • Gernot Glöckner,
  • Stephan C. Schuster,
  • and B. Franklin Pugh

  Genome Res. June 2012 22: 1098-1106; Published in Advance March 20, 2012, doi:10.1101/gr.131649.111
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  Single-cell sequencing provides clues about the host interactions of segmented filamentous bacteria (SFB)

  • Sünje J. Pamp,
  • Eoghan D. Harrington,
  • Stephen R. Quake,
  • David A. Relman,
  • and Paul C. Blainey

  Genome Res. June 2012 22: 1107-1119; Published in Advance March 20, 2012, doi:10.1101/gr.131482.111
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