Index by Author

June 2012; 22 (6)
  1. A
  2. B
  3. C
  4. D
  5. E
  6. F
  7. G
  8. H
  9. I
  10. J
  11. K
  12. L
  13. M
  14. N
  15. O
  16. P
  17. Q
  18. R
  19. S
  20. T
  21. U
  22. V
  23. W
  24. X
  25. Y
  26. Z

A

  1. Adesanya, T.M. Ayodele

    • A systematic study of gene expression variation at single-nucleotide resolution reveals widespread regulatory roles for uAUGs Genome Res. June 2012 22: 1089-1097; Published in Advance March 27, 2012, doi:10.1101/gr.117366.110

  2. Adey, Andrew

  3. Agamy, Orly

  4. Ahituv, Nadav

  5. Akdis, Cezmi A.

    • Primate segmental duplication creates novel promoters for the LRRC37 gene family within the 17q21.31 inversion polymorphism region Genome Res. June 2012 22: 1050-1058; Published in Advance March 14, 2012, doi:10.1101/gr.134098.111

B

  1. Babak, Tomas

  2. Ballabio, Andrea

  3. Banfi, Sandro

  4. Barta, Andrea

    • Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis Genome Res. June 2012 22: 1184-1195; Published in Advance March 5, 2012, doi:10.1101/gr.134106.111
      OPEN ACCESS ARTICLE

  5. Bartels, Stefanie J.J.

    • Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk Genome Res. June 2012 22: 1128-1138; Published in Advance March 30, 2012, doi:10.1101/gr.133728.111

  6. Bejerano, Gill

  7. Bekpen, Cemalettin

    • Primate segmental duplication creates novel promoters for the LRRC37 gene family within the 17q21.31 inversion polymorphism region Genome Res. June 2012 22: 1050-1058; Published in Advance March 14, 2012, doi:10.1101/gr.134098.111

  8. Belcastro, Vincenzo

  9. Birk, Ohad S.

  10. Birnbaum, Ramon Y.

  11. Blainey, Paul C.

    • Single-cell sequencing provides clues about the host interactions of segmented filamentous bacteria (SFB) Genome Res. June 2012 22: 1107-1119; Published in Advance March 20, 2012, doi:10.1101/gr.131482.111
      OPEN ACCESS ARTICLE

  12. Bock, Christoph

    • Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk Genome Res. June 2012 22: 1128-1138; Published in Advance March 30, 2012, doi:10.1101/gr.133728.111

  13. Brinkman, Arie B.

    • Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk Genome Res. June 2012 22: 1128-1138; Published in Advance March 30, 2012, doi:10.1101/gr.133728.111

  14. Brown, John W.S.

    • Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis Genome Res. June 2012 22: 1184-1195; Published in Advance March 5, 2012, doi:10.1101/gr.134106.111
      OPEN ACCESS ARTICLE

  15. Brown, Myles

C

  1. Catacchio, Claudia R.

  2. Chang, Gue Su

  3. Chen, Mei Wei

  4. Chen, Ronghua

  5. Chiaromonte, Francesca

  6. Clark, Susan J.

    • Bisulfite sequencing of chromatin immunoprecipitated DNA (BisChIP-seq) directly informs methylation status of histone-modified DNA Genome Res. June 2012 22: 1120-1127; Published in Advance March 30, 2012, doi:10.1101/gr.132076.111

  7. Clarke, Shoa L.

  8. Clowney, E. Josephine

  9. Cookson, William O.

  10. Coolen, Marcel W.

    • Bisulfite sequencing of chromatin immunoprecipitated DNA (BisChIP-seq) directly informs methylation status of histone-modified DNA Genome Res. June 2012 22: 1120-1127; Published in Advance March 30, 2012, doi:10.1101/gr.132076.111

  11. Corces, Victor G.

  12. Cotney, Justin

    • Chromatin state signatures associated with tissue-specific gene expression and enhancer activity in the embryonic limb Genome Res. June 2012 22: 1069-1080; Published in Advance March 15, 2012, doi:10.1101/gr.129817.111

D

  1. D'Angelo, Giovanni

  2. DeMare, Laura E.

    • Chromatin state signatures associated with tissue-specific gene expression and enhancer activity in the embryonic limb Genome Res. June 2012 22: 1069-1080; Published in Advance March 15, 2012, doi:10.1101/gr.129817.111

  3. Derti, Adnan

  4. Dharmalingam, Gopuraja

E

  1. Eckert, Kristin A.

  2. Eichinger, Ludwig

  3. Eichler, Evan E.

  4. Erlich, Yaniv

  5. Everman, David B.

F

  1. Felder, Marius

  2. Fernandez, Serena

  3. Flockhart, Ross J.

  4. Fungtammasan, Arkarachai

G

  1. Garrett-Engele, Philip

  2. Gennarino, Vincenzo Alessandro

  3. Gerstein, Mark B.

    • Chromatin state signatures associated with tissue-specific gene expression and enhancer activity in the embryonic limb Genome Res. June 2012 22: 1069-1080; Published in Advance March 15, 2012, doi:10.1101/gr.129817.111

  4. Glöckner, Gernot

  5. Gnirke, Andreas

    • Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk Genome Res. June 2012 22: 1128-1138; Published in Advance March 30, 2012, doi:10.1101/gr.133728.111

  6. Golan, David

  7. Graves, Tina A.

  8. Gu, Hongcang

    • Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk Genome Res. June 2012 22: 1128-1138; Published in Advance March 30, 2012, doi:10.1101/gr.133728.111

  9. Gurrieri, Fiorella

  10. Gymrek, Melissa

H

  1. Han, Yong-Mahn

    • H2B monoubiquitylation is a 5′-enriched active transcription mark and correlates with exon–intron structure in human cells Genome Res. June 2012 22: 1026-1035; Published in Advance March 15, 2012, doi:10.1101/gr.120634.111

  2. Harrington, Eoghan D.

    • Single-cell sequencing provides clues about the host interactions of segmented filamentous bacteria (SFB) Genome Res. June 2012 22: 1107-1119; Published in Advance March 20, 2012, doi:10.1101/gr.131482.111
      OPEN ACCESS ARTICLE

  3. He, Housheng Hansen

  4. Horswell, Stuart D.

  5. Hutchison, Claire E.

J

  1. Jiang, Cizhong

  2. Johnson, Jason M.

  3. Jordan, V. Craig

  4. Jung, Inkyung

    • H2B monoubiquitylation is a 5′-enriched active transcription mark and correlates with exon–intron structure in human cells Genome Res. June 2012 22: 1026-1035; Published in Advance March 15, 2012, doi:10.1101/gr.120634.111

K

  1. Kalyna, Maria

    • Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis Genome Res. June 2012 22: 1184-1195; Published in Advance March 5, 2012, doi:10.1101/gr.134106.111
      OPEN ACCESS ARTICLE

  2. Kellner, Wendy A.

  3. Khavari, Paul A.

  4. Kim, Dongsup

    • H2B monoubiquitylation is a 5′-enriched active transcription mark and correlates with exon–intron structure in human cells Genome Res. June 2012 22: 1026-1035; Published in Advance March 15, 2012, doi:10.1101/gr.120634.111

  5. Kim, Mee J.

  6. Kim, Mirang

    • H2B monoubiquitylation is a 5′-enriched active transcription mark and correlates with exon–intron structure in human cells Genome Res. June 2012 22: 1026-1035; Published in Advance March 15, 2012, doi:10.1101/gr.120634.111

  7. Kim, Seung-Kyoon

    • H2B monoubiquitylation is a 5′-enriched active transcription mark and correlates with exon–intron structure in human cells Genome Res. June 2012 22: 1026-1035; Published in Advance March 15, 2012, doi:10.1101/gr.120634.111

  8. Kim, Yong Sung

    • H2B monoubiquitylation is a 5′-enriched active transcription mark and correlates with exon–intron structure in human cells Genome Res. June 2012 22: 1026-1035; Published in Advance March 15, 2012, doi:10.1101/gr.120634.111

  9. Kovalski, Joanna

  10. Kretz, Markus

L

  1. Lee, Daeyoup

    • H2B monoubiquitylation is a 5′-enriched active transcription mark and correlates with exon–intron structure in human cells Genome Res. June 2012 22: 1026-1035; Published in Advance March 15, 2012, doi:10.1101/gr.120634.111

  2. Leng, Jing

    • Chromatin state signatures associated with tissue-specific gene expression and enhancer activity in the embryonic limb Genome Res. June 2012 22: 1069-1080; Published in Advance March 15, 2012, doi:10.1101/gr.129817.111

  3. Liang, Liming

  4. Liu, X. Shirley

  5. Lomvardas, Stavros

M

  1. MacIsaac, Kenzie D.

  2. Makova, Kateryna D.

  3. Marks, Hendrik

    • Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk Genome Res. June 2012 22: 1128-1138; Published in Advance March 30, 2012, doi:10.1101/gr.133728.111

  4. Marques-Bonet, Tomas

  5. Marquez, Yamile

    • Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis Genome Res. June 2012 22: 1184-1195; Published in Advance March 5, 2012, doi:10.1101/gr.134106.111
      OPEN ACCESS ARTICLE

  6. Mascarenhas, Nicholas

  7. Matarese, Filomena

    • Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk Genome Res. June 2012 22: 1128-1138; Published in Advance March 30, 2012, doi:10.1101/gr.133728.111

  8. Mavrich, Travis N.

  9. Meissner, Alexander

    • Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk Genome Res. June 2012 22: 1128-1138; Published in Advance March 30, 2012, doi:10.1101/gr.133728.111

  10. Meyer, Clifford A.

  11. Mitra, Robi D.

    • A systematic study of gene expression variation at single-nucleotide resolution reveals widespread regulatory roles for uAUGs Genome Res. June 2012 22: 1089-1097; Published in Advance March 27, 2012, doi:10.1101/gr.117366.110

  12. Müller, Rolf

  13. Mutarelli, Margherita

N

  1. Naoumova, Rossi P.

  2. Nguyen, Loan

  3. Noegel, Angelika A.

  4. Noonan, James P.

    • Chromatin state signatures associated with tissue-specific gene expression and enhancer activity in the embryonic limb Genome Res. June 2012 22: 1069-1080; Published in Advance March 15, 2012, doi:10.1101/gr.129817.111

O

  1. Oh, Sunghee

    • Chromatin state signatures associated with tissue-specific gene expression and enhancer activity in the embryonic limb Genome Res. June 2012 22: 1069-1080; Published in Advance March 15, 2012, doi:10.1101/gr.129817.111

P

  1. Pamp, Sünje J.

    • Single-cell sequencing provides clues about the host interactions of segmented filamentous bacteria (SFB) Genome Res. June 2012 22: 1107-1119; Published in Advance March 20, 2012, doi:10.1101/gr.131482.111
      OPEN ACCESS ARTICLE

  2. Pappalardo, Zachary

  3. Pugh, B. Franklin

Q

  1. Qu, Kun

  2. Quake, Stephen R.

    • Single-cell sequencing provides clues about the host interactions of segmented filamentous bacteria (SFB) Genome Res. June 2012 22: 1107-1119; Published in Advance March 20, 2012, doi:10.1101/gr.131482.111
      OPEN ACCESS ARTICLE

R

  1. Ramos, Edward

  2. Reilly, Steven K.

    • Chromatin state signatures associated with tissue-specific gene expression and enhancer activity in the embryonic limb Genome Res. June 2012 22: 1069-1080; Published in Advance March 15, 2012, doi:10.1101/gr.129817.111

  3. Relman, David A.

    • Single-cell sequencing provides clues about the host interactions of segmented filamentous bacteria (SFB) Genome Res. June 2012 22: 1107-1119; Published in Advance March 20, 2012, doi:10.1101/gr.131482.111
      OPEN ACCESS ARTICLE

  4. Robinson, Mark D.

    • Bisulfite sequencing of chromatin immunoprecipitated DNA (BisChIP-seq) directly informs methylation status of histone-modified DNA Genome Res. June 2012 22: 1120-1127; Published in Advance March 30, 2012, doi:10.1101/gr.132076.111

  5. Rohl, Carol A.

  6. Rosset, Saharon

  7. Russolillo, Giorgio

S

  1. Sajjadian, Saba

  2. Salm, Maximilian P.A.

  3. Sanges, Remo

  4. Sardiello, Marco

  5. Schadt, Eric E.

  6. Schuster, Stephan C.

  7. Schwartz, Charles E.

  8. Shendure, Jay

  9. Shoulders, Carol C.

  10. Simmer, Femke

    • Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk Genome Res. June 2012 22: 1128-1138; Published in Advance March 30, 2012, doi:10.1101/gr.133728.111

  11. Simpson, Craig

    • Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis Genome Res. June 2012 22: 1184-1195; Published in Advance March 5, 2012, doi:10.1101/gr.134106.111
      OPEN ACCESS ARTICLE

  12. Siswara, Priscillia

    • Primate segmental duplication creates novel promoters for the LRRC37 gene family within the 17q21.31 inversion polymorphism region Genome Res. June 2012 22: 1050-1058; Published in Advance March 14, 2012, doi:10.1101/gr.134098.111

  13. Song, Jenny Z.

    • Bisulfite sequencing of chromatin immunoprecipitated DNA (BisChIP-seq) directly informs methylation status of histone-modified DNA Genome Res. June 2012 22: 1120-1127; Published in Advance March 30, 2012, doi:10.1101/gr.132076.111

  14. Speedy, Helen E.

  15. Sriram, Shreedharan

  16. Statham, Aaron L.

    • Bisulfite sequencing of chromatin immunoprecipitated DNA (BisChIP-seq) directly informs methylation status of histone-modified DNA Genome Res. June 2012 22: 1120-1127; Published in Advance March 30, 2012, doi:10.1101/gr.132076.111

  17. Stevens, Richard C.

  18. Stirzaker, Clare

    • Bisulfite sequencing of chromatin immunoprecipitated DNA (BisChIP-seq) directly informs methylation status of histone-modified DNA Genome Res. June 2012 22: 1120-1127; Published in Advance March 30, 2012, doi:10.1101/gr.132076.111

  19. Stunnenberg, Hendrik G.

    • Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk Genome Res. June 2012 22: 1128-1138; Published in Advance March 30, 2012, doi:10.1101/gr.133728.111

  20. Sudmant, Peter H.

T

  1. Takenaka, Naomi

  2. Tastekin, Ibrahim

    • Primate segmental duplication creates novel promoters for the LRRC37 gene family within the 17q21.31 inversion polymorphism region Genome Res. June 2012 22: 1050-1058; Published in Advance March 14, 2012, doi:10.1101/gr.134098.111

  3. Tomsho, Lynn

V

  1. Van Bortle, Kevin

  2. Ventura, Mario

  3. Verde, Pasquale

  4. Vives, Laura

W

  1. Walsh, Erin

  2. Ward, Elissa

  3. Webster, Dan E.

  4. Wenger, Aaron M.

  5. Wierzbicki, Anthony S.

  6. Wilson, Richard K.

Y

  1. Yamanaka, Takayuki

  2. Yang, Xia

  3. Yun, Yue

    • A systematic study of gene expression variation at single-nucleotide resolution reveals widespread regulatory roles for uAUGs Genome Res. June 2012 22: 1089-1097; Published in Advance March 27, 2012, doi:10.1101/gr.117366.110

Z

  1. Zhang, Yingying

    • Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk Genome Res. June 2012 22: 1128-1138; Published in Advance March 30, 2012, doi:10.1101/gr.133728.111

  2. Zhao, Jingjing

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