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Methods

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Targeted gene addition to a predetermined site in the human genome using a ZFN-based nicking enzyme
- Jianbin Wang,
- Geoffrey Friedman,
- Yannick Doyon,
- Nathaniel S. Wang,
- Carrie Jiaxin Li,
- Jeffrey C. Miller,
- Kevin L. Hua,
- Jenny Jiacheng Yan,
- Joshua E. Babiarz,
- Philip D. Gregory,
- and Michael C. Holmes
Genome Res. July 2012 22: 1316-1326; Published in Advance March 20, 2012, doi:10.1101/gr.122879.111
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Precision genome engineering with programmable DNA-nicking enzymes
- Eunji Kim,
- Sojung Kim,
- Duk Hyoung Kim,
- Beom-Soon Choi,
- Ik-Young Choi,
- and Jin-Soo Kim
Genome Res. July 2012 22: 1327-1333; Published in Advance April 20, 2012, doi:10.1101/gr.138792.112
OPEN ACCESS ARTICLE
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Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks
- Daniel Marbach,
- Sushmita Roy,
- Ferhat Ay,
- Patrick E. Meyer,
- Rogerio Candeias,
- Tamer Kahveci,
- Christopher A. Bristow,
- and Manolis Kellis
Genome Res. July 2012 22: 1334-1349; Published in Advance March 28, 2012, doi:10.1101/gr.127191.111
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Comparative dynamic transcriptome analysis (cDTA) reveals mutual feedback between mRNA synthesis and degradation
- Mai Sun,
- Björn Schwalb,
- Daniel Schulz,
- Nicole Pirkl,
- Stefanie Etzold,
- Laurent Larivière,
- Kerstin C. Maier,
- Martin Seizl,
- Achim Tresch,
- and Patrick Cramer
Genome Res. July 2012 22: 1350-1359; Published in Advance March 30, 2012, doi:10.1101/gr.130161.111
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RIP-chip-SRM—a new combinatorial large-scale approach identifies a set of translationally regulated bantam/miR-58 targets in C. elegans
- Marko Jovanovic,
- Lukas Reiter,
- Alejandra Clark,
- Manuel Weiss,
- Paola Picotti,
- Hubert Rehrauer,
- Andreas Frei,
- Lukas J. Neukomm,
- Ethan Kaufman,
- Bernd Wollscheid,
- Martin J. Simard,
- Eric A. Miska,
- Ruedi Aebersold,
- André P. Gerber,
- and Michael O. Hengartner
Genome Res. July 2012 22: 1360-1371; Published in Advance March 27, 2012, doi:10.1101/gr.133330.111
OPEN ACCESS ARTICLE

Resource

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Triplexator: Detecting nucleic acid triple helices in genomic and transcriptomic data
- Fabian A. Buske,
- Denis C. Bauer,
- John S. Mattick,
- and Timothy L. Bailey
Genome Res. July 2012 22: 1372-1381; Published in Advance May 1, 2012, doi:10.1101/gr.130237.111

Erratum

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Errata
Genome Res. July 2012 22: 1382

Research

Genome-scale analysis of DNA methylation in lung adenocarcinoma and integration with mRNA expression

Reorganization of the host epigenome by a viral oncogene

The human phosphotyrosine signaling network: Evolution and hotspots of hijacking in cancer

Chimeras taking shape: Potential functions of proteins encoded by chimeric RNA transcripts

Impact of microRNA regulation on variation in human gene expression

Disentangling the relationship between sex-biased gene expression and X-linkage

Deep sequencing the circadian and diurnal transcriptome of Drosophila brain

Multidimensional regulation of gene expression in the C. elegans embryo

Physical tethering and volume exclusion determine higher-order genome organization in budding yeast

Genome-wide analysis of mutations in mutant lineages selected following fast-neutron irradiation mutagenesis of Arabidopsis thaliana

Methods

Targeted gene addition to a predetermined site in the human genome using a ZFN-based nicking enzyme

Precision genome engineering with programmable DNA-nicking enzymes

Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks

Comparative dynamic transcriptome analysis (cDTA) reveals mutual feedback between mRNA synthesis and degradation

RIP-chip-SRM—a new combinatorial large-scale approach identifies a set of translationally regulated bantam/miR-58 targets in C. elegans

Resource

Triplexator: Detecting nucleic acid triple helices in genomic and transcriptomic data

Erratum

Errata

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