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Tracing genome size dynamics in sharks and rays with inclusive sequence analysis by the Squalomix Consortium

  • First Published June 16, 2026
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A comprehensive single-cell atlas of monoallelic expression across various tissues in zebrafish

  • First Published May 28, 2026
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Lignature provides a curated resource of ligand-induced transcriptomic signatures for signaling inference

  • First Published April 8, 2026
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Whole-genome sequencing of diverse 351 cultured prokaryotes including as-yet-unsequenced type strains

  • First Published April 7, 2026
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Isoform- and pathway-specific regulation of post-transcriptional RNA processing in human cells

  • First Published March 26, 2026
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Single-nucleus multiomic profiling of the aging mouse substantia nigra reveals conserved gene alterations linked to Parkinson's disease

  • First Published March 4, 2026
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Tetrahymena" > A systems view on DNA damage response kinetics in Tetrahymena

  • First Published January 28, 2026
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Cell type–specific gene regulatory atlas prioritizes drug targets and repurposable medicines in Alzheimer's disease

  • First Published January 21, 2026
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The SynMall resource for characterizing the functional impact of synonymous variation

  • First Published December 17, 2025
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The PanOryza pangene catalog of Asian cultivated rice

  • First Published December 12, 2025
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Epigenomics of embryogenesis in turbot

  • First Published November 4, 2025
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Integrative chromatin state annotation of 234 human ENCODE4 cell types using Segway

  • First Published October 6, 2025
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Analyzing the large and complex SFARI autism cohort data using the Genotypes and Phenotypes in Families (GPF) platform

  • First Published September 16, 2025
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Quadrupia provides a comprehensive catalog of G-quadruplexes across genomes from the tree of life

  • First Published August 26, 2025
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High-quality assembly of the Chinese white truffle genome and recalibrated divergence time estimate provide insight into the evolutionary dynamics of Tuberaceae

  • First Published August 21, 2025
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Interspecies systems biology links bacterial metabolic pathways to nematode gene expression, chemotaxis behavior, and survival

  • First Published August 5, 2025
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Caenorhabditis elegans" > CGC1, a new reference genome for Caenorhabditis elegans

  • First Published July 15, 2025
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A map of enhancer regions in primary human neural progenitor cells using capture STARR-seq

  • First Published July 11, 2025
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Multitissue single-nucleus RNA-seq reveals cell type–specific regulatory patterns of alternative polyadenylation in pigs

  • First Published June 16, 2025
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Integrated single-cell multiome analysis reveals muscle fiber-type gene regulatory circuitry modulated by endurance exercise

  • First Published May 20, 2025
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Charting the regulatory landscape of TP53 on transposable elements in cancer

  • First Published May 13, 2025
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MPRAbase a Massively Parallel Reporter Assay database

  • First Published April 22, 2025
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Building better genome annotations across the tree of life

  • First Published April 15, 2025
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Exploring the epigenome profiles of repetitive elements with the WashU Repeat Browser

  • First Published February 21, 2025
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Common and specific gene regulatory programs in zebrafish caudal fin regeneration at single-cell resolution

  • First Published January 14, 2025
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An integrative TAD catalog in lymphoblastoid cell lines discloses the functional impact of deletions and insertions in human genomes

  • First Published December 5, 2024
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Haplotype-resolved genome and population genomics of the threatened garden dormouse in Europe

  • First Published November 14, 2024
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High-quality sika deer omics data and integrative analysis reveal genic and cellular regulation of antler regeneration

  • First Published November 14, 2024
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Construction and evaluation of a new rat reference genome assembly, GRCr8, from long reads and long-range scaffolding

  • First Published November 8, 2024
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Generation and analysis of a mouse multitissue genome annotation atlas

  • First Published October 23, 2024
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Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships" > Binding profiles for 961 Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships

  • First Published October 22, 2024
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Dynamic dysregulation of retrotransposons in neurodegenerative diseases at the single-cell level

  • First Published October 18, 2024
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PWAS Hub for exploring gene-based associations of common complex diseases

  • First Published October 15, 2024
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High-coverage nanopore sequencing of samples from the 1000 Genomes Project to build a comprehensive catalog of human genetic variation

  • First Published October 2, 2024
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Full-length RNA transcript sequencing traces brain isoform diversity in house mouse natural populations

  • First Published September 17, 2024
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Saccharomyces bayanus genome divergence after hybridization" > Chromosome-level subgenome-aware de novo assembly provides insight into Saccharomyces bayanus genome divergence after hybridization

  • First Published September 17, 2024
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Comprehensive identification of genomic and environmental determinants of phenotypic plasticity in maize

  • First Published September 13, 2024
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Allele-specific transcription factor binding across human brain regions offers mechanistic insight into eQTLs

  • First Published August 16, 2024
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Visualization and analysis of medically relevant tandem repeats in nanopore sequencing of control cohorts with pathSTR

  • First Published August 15, 2024
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Global compositional and functional states of the human gut microbiome in health and disease

  • First Published July 22, 2024
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DEAD box RNA helicases are pervasive protein kinase interactors and activators

  • First Published July 10, 2024
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Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes

  • First Published July 1, 2024
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Wolffia australiana" > Streamlined spatial and environmental expression signatures characterize the minimalist duckweed Wolffia australiana

  • First Published July 1, 2024
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A harmonized public resource of deeply sequenced diverse human genomes

  • First Published May 15, 2024
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Hydractinia reveals that their stem cells use a toolkit of evolutionarily shared genes with all animals" > The genome of the colonial hydroid Hydractinia reveals that their stem cells use a toolkit of evolutionarily shared genes with all animals

  • First Published March 20, 2024
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Haplotype-resolved 3D chromatin architecture of the hybrid pig

  • First Published March 13, 2024
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Comprehensive assessment of 11 de novo HiFi assemblers on complex eukaryotic genomes and metagenomes

  • First Published March 1, 2024
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Pangenome-genotyped structural variation improves molecular phenotype mapping in cattle

  • First Published February 14, 2024
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