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  AGAP duplicons associate with structural diversity at Chromosome 10q11.22

  • Stefania Fornezza,
  • Vincenza Simona Delvecchio,
  • William T. Harvey,
  • Philip C. Dishuck,
  • Evan E. Eichler,
  • and Giuliana Giannuzzi

  Genome Res. October 2024 34: 1487-1499; Published in Advance September 25, 2024, doi:10.1101/gr.279454.124
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  Targeted and complete genomic sequencing of the major histocompatibility complex in haplotypic form of individual heterozygous samples

  • Taishan Hu,
  • Timothy L. Mosbruger,
  • Nikolaos G. Tairis,
  • Amalia Dinou,
  • Pushkala Jayaraman,
  • Mahdi Sarmady,
  • Kingham Brewster,
  • Yang Li,
  • Tristan J. Hayeck,
  • Jamie L. Duke,
  • and Dimitri S. Monos

  Genome Res. October 2024 34: 1500-1513; Published in Advance September 26, 2024, doi:10.1101/gr.278588.123
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  Chromatin interaction maps identify oncogenic targets of enhancer duplications in cancer

  • Yueqiang Song,
  • Fuyuan Li,
  • Shangzi Wang,
  • Yuntong Wang,
  • Cong Lai,
  • Lian Chen,
  • Ning Jiang,
  • Jin Li,
  • Xingdong Chen,
  • Swneke D. Bailey,
  • and Xiaoyang Zhang

  Genome Res. October 2024 34: 1514-1527; Published in Advance October 18, 2024, doi:10.1101/gr.278418.123
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  Evidence for compensatory evolution within pleiotropic regulatory elements

  • Zane Kliesmete,
  • Peter Orchard,
  • Victor Yan Kin Lee,
  • Johanna Geuder,
  • Simon M. Krauß,
  • Mari Ohnuki,
  • Jessica Jocher,
  • Beate Vieth,
  • Wolfgang Enard,
  • and Ines Hellmann

  Genome Res. October 2024 34: 1528-1539; Published in Advance September 10, 2024, doi:10.1101/gr.279001.124
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  Mutational scanning of CRX classifies clinical variants and reveals biochemical properties of the transcriptional effector domain

  • James L. Shepherdson,
  • David M. Granas,
  • Jie Li,
  • Zara Shariff,
  • Stephen P. Plassmeyer,
  • Alex S. Holehouse,
  • Michael A. White,
  • and Barak A. Cohen

  Genome Res. October 2024 34: 1540-1552; Published in Advance September 25, 2024, doi:10.1101/gr.279415.124
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  De novo genome assemblies of two cryptodiran turtles with ZZ/ZW and XX/XY sex chromosomes provide insights into patterns of genome reshuffling and uncover novel 3D genome folding in amniotes

  • Basanta Bista,
  • Laura González-Rodelas,
  • Lucía Álvarez-González,
  • Zhi-qiang Wu,
  • Eugenia E. Montiel,
  • Ling Sze Lee,
  • Daleen B. Badenhorst,
  • Srihari Radhakrishnan,
  • Robert Literman,
  • Beatriz Navarro-Dominguez,
  • John B. Iverson,
  • Simon Orozco-Arias,
  • Josefa González,
  • Aurora Ruiz-Herrera,
  • and Nicole Valenzuela

  Genome Res. October 2024 34: 1553-1569; Published in Advance October 16, 2024, doi:10.1101/gr.279443.124
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  Evolutionary dynamics of polyadenylation signals and their recognition strategies in protists

  • Marcin P. Sajek,
  • Danielle Y. Bilodeau,
  • Michael A. Beer,
  • Emma Horton,
  • Yukiko Miyamoto,
  • Katrina B. Velle,
  • Lars Eckmann,
  • Lillian Fritz-Laylin,
  • Olivia S. Rissland,
  • and Neelanjan Mukherjee

  Genome Res. October 2024 34: 1570-1581; Published in Advance September 26, 2024, doi:10.1101/gr.279526.124
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  Global characterization of somatic mutations and DNA methylation changes during vegetative propagation in strawberries

  • Shaoqiang Hu,
  • Xiangguo Zeng,
  • Yuguo Liu,
  • Yongping Li,
  • Minghao Qu,
  • Wen-Biao Jiao,
  • Yongchao Han,
  • and Chunying Kang

  Genome Res. October 2024 34: 1582-1594; Published in Advance October 15, 2024, doi:10.1101/gr.279378.124
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  Complete genomes of Asgard archaea reveal diverse integrated and mobile genetic elements

  • Luis E. Valentin-Alvarado,
  • Ling-Dong Shi,
  • Kathryn E. Appler,
  • Alexander Crits-Christoph,
  • Valerie De Anda,
  • Benjamin A. Adler,
  • Michael L. Cui,
  • Lynn Ly,
  • Pedro Leão,
  • Richard J. Roberts,
  • Rohan Sachdeva,
  • Brett J. Baker,
  • David F. Savage,
  • and Jillian F. Banfield

  Genome Res. October 2024 34: 1595-1609; Published in Advance October 15, 2024, doi:10.1101/gr.279480.124
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