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Research

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  Systems consequences of amplicon formation in human breast cancer

  • Koichiro Inaki,
  • Francesca Menghi,
  • Xing Yi Woo,
  • Joel P. Wagner,
  • Pierre-Étienne Jacques,
  • Yi Fang Lee,
  • Phung Trang Shreckengast,
  • Wendy WeiJia Soon,
  • Ankit Malhotra,
  • Audrey S.M. Teo,
  • Axel M. Hillmer,
  • Alexis Jiaying Khng,
  • Xiaoan Ruan,
  • Swee Hoe Ong,
  • Denis Bertrand,
  • Niranjan Nagarajan,
  • R. Krishna Murthy Karuturi,
  • Alfredo Hidalgo Miranda,
  • and Edison T. Liu

  Genome Res. October 2014 24: 1559-1571; Published in Advance September 3, 2014, doi:10.1101/gr.164871.113
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  Cotranscriptional histone H2B monoubiquitylation is tightly coupled with RNA polymerase II elongation rate

  • Gilad Fuchs,
  • Dror Hollander,
  • Yoav Voichek,
  • Gil Ast,
  • and Moshe Oren

  Genome Res. October 2014 24: 1572-1583; Published in Advance July 21, 2014, doi:10.1101/gr.176487.114
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  The PML-associated protein DEK regulates the balance of H3.3 loading on chromatin and is important for telomere integrity

  • Kristina Ivanauskiene,
  • Erwan Delbarre,
  • James D. McGhie,
  • Thomas Küntziger,
  • Lee H. Wong,
  • and Philippe Collas

  Genome Res. October 2014 24: 1584-1594; Published in Advance July 21, 2014, doi:10.1101/gr.173831.114
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  High-throughput functional testing of ENCODE segmentation predictions

  • Jamie C. Kwasnieski,
  • Christopher Fiore,
  • Hemangi G. Chaudhari,
  • and Barak A. Cohen

  Genome Res. October 2014 24: 1595-1602; Published in Advance July 17, 2014, doi:10.1101/gr.173518.114
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  T-cell receptor repertoires share a restricted set of public and abundant CDR3 sequences that are associated with self-related immunity

  • Asaf Madi,
  • Eric Shifrut,
  • Shlomit Reich-Zeliger,
  • Hilah Gal,
  • Katharine Best,
  • Wilfred Ndifon,
  • Benjamin Chain,
  • Irun R. Cohen,
  • and Nir Friedman

  Genome Res. October 2014 24: 1603-1612; Published in Advance July 14, 2014, doi:10.1101/gr.170753.113
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  Genome-wide DNA methylation patterns in LSH mutant reveals de-repression of repeat elements and redundant epigenetic silencing pathways

  • Weishi Yu,
  • Carl McIntosh,
  • Ryan Lister,
  • Iris Zhu,
  • Yixing Han,
  • Jianke Ren,
  • David Landsman,
  • Eunice Lee,
  • Victorino Briones,
  • Minoru Terashima,
  • Robert Leighty,
  • Joseph R. Ecker,
  • and Kathrin Muegge

  Genome Res. October 2014 24: 1613-1623; Published in Advance August 28, 2014, doi:10.1101/gr.172015.114
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  C. elegans whole-genome sequencing reveals mutational signatures related to carcinogens and DNA repair deficiency

  • Bettina Meier,
  • Susanna L. Cooke,
  • Joerg Weiss,
  • Aymeric P. Bailly,
  • Ludmil B. Alexandrov,
  • John Marshall,
  • Keiran Raine,
  • Mark Maddison,
  • Elizabeth Anderson,
  • Michael R. Stratton,
  • Anton Gartner,
  • and Peter J. Campbell

  Genome Res. October 2014 24: 1624-1636; Published in Advance July 16, 2014, doi:10.1101/gr.175547.114
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  RSC-dependent constructive and destructive interference between opposing arrays of phased nucleosomes in yeast

  • Dwaipayan Ganguli,
  • Răzvan V. Chereji,
  • James R. Iben,
  • Hope A. Cole,
  • and David J. Clark

  Genome Res. October 2014 24: 1637-1649; Published in Advance July 11, 2014, doi:10.1101/gr.177014.114
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  Evolutionarily diverse determinants of meiotic DNA break and recombination landscapes across the genome

  • Kyle R. Fowler,
  • Mariko Sasaki,
  • Neta Milman,
  • Scott Keeney,
  • and Gerald R. Smith

  Genome Res. October 2014 24: 1650-1664; Published in Advance July 14, 2014, doi:10.1101/gr.172122.114
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  Differential retention and divergent resolution of duplicate genes following whole-genome duplication

  • Casey L. McGrath,
  • Jean-Francois Gout,
  • Parul Johri,
  • Thomas G. Doak,
  • and Michael Lynch

  Genome Res. October 2014 24: 1665-1675; Published in Advance August 1, 2014, doi:10.1101/gr.173740.114
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  Genomic analysis of the causative agents of coccidiosis in domestic chickens

  • Adam J. Reid,
  • Damer P. Blake,
  • Hifzur R. Ansari,
  • Karen Billington,
  • Hilary P. Browne,
  • Josephine Bryant,
  • Matt Dunn,
  • Stacy S. Hung,
  • Fumiya Kawahara,
  • Diego Miranda-Saavedra,
  • Tareq B. Malas,
  • Tobias Mourier,
  • Hardeep Naghra,
  • Mridul Nair,
  • Thomas D. Otto,
  • Neil D. Rawlings,
  • Pierre Rivailler,
  • Alejandro Sanchez-Flores,
  • Mandy Sanders,
  • Chandra Subramaniam,
  • Yea-Ling Tay,
  • Yong Woo,
  • Xikun Wu,
  • Bart Barrell,
  • Paul H. Dear,
  • Christian Doerig,
  • Arthur Gruber,
  • Alasdair C. Ivens,
  • John Parkinson,
  • Marie-Adèle Rajandream,
  • Martin W. Shirley,
  • Kiew-Lian Wan,
  • Matthew Berriman,
  • Fiona M. Tomley,
  • and Arnab Pain

  Genome Res. October 2014 24: 1676-1685; Published in Advance July 11, 2014, doi:10.1101/gr.168955.113
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