Table of Contents

Methods

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Application of histone modification-specific interaction domains as an alternative to antibodies
- Goran Kungulovski,
- Ina Kycia,
- Raluca Tamas,
- Renata Z. Jurkowska,
- Srikanth Kudithipudi,
- Chisato Henry,
- Richard Reinhardt,
- Paul Labhart,
- and Albert Jeltsch
Genome Res. November 2014 24: 1842-1853; Published in Advance October 9, 2014, doi:10.1101/gr.170985.113
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Unbiased analysis of potential targets of breast cancer susceptibility loci by Capture Hi-C
- Nicola H. Dryden,
- Laura R. Broome,
- Frank Dudbridge,
- Nichola Johnson,
- Nick Orr,
- Stefan Schoenfelder,
- Takashi Nagano,
- Simon Andrews,
- Steven Wingett,
- Iwanka Kozarewa,
- Ioannis Assiotis,
- Kerry Fenwick,
- Sarah L. Maguire,
- James Campbell,
- Rachael Natrajan,
- Maryou Lambros,
- Eleni Perrakis,
- Alan Ashworth,
- Peter Fraser,
- and Olivia Fletcher
Genome Res. November 2014 24: 1854-1868; Published in Advance August 13, 2014, doi:10.1101/gr.175034.114
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Linking signaling pathways to transcriptional programs in breast cancer
- Hatice U. Osmanbeyoglu,
- Raphael Pelossof,
- Jacqueline F. Bromberg,
- and Christina S. Leslie
Genome Res. November 2014 24: 1869-1880; Published in Advance September 2, 2014, doi:10.1101/gr.173039.114
OPEN ACCESS ARTICLE
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TITAN: inference of copy number architectures in clonal cell populations from tumor whole-genome sequence data
- Gavin Ha,
- Andrew Roth,
- Jaswinder Khattra,
- Julie Ho,
- Damian Yap,
- Leah M. Prentice,
- Nataliya Melnyk,
- Andrew McPherson,
- Ali Bashashati,
- Emma Laks,
- Justina Biele,
- Jiarui Ding,
- Alan Le,
- Jamie Rosner,
- Karey Shumansky,
- Marco A. Marra,
- C. Blake Gilks,
- David G. Huntsman,
- Jessica N. McAlpine,
- Samuel Aparicio,
- and Sohrab P. Shah
Genome Res. November 2014 24: 1881-1893; Published in Advance July 24, 2014, doi:10.1101/gr.180281.114
OPEN ACCESS ARTICLE

Resource

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The landscape of human STR variation
- Thomas Willems,
- Melissa Gymrek,
- Gareth Highnam,
- The 1000 Genomes Project Consortium,
- David Mittelman,
- and Yaniv Erlich
Genome Res. November 2014 24: 1894-1904; Published in Advance August 18, 2014, doi:10.1101/gr.177774.114
OPEN ACCESS ARTICLE

Research

Genetic and environmental exposures constrain epigenetic drift over the human life course

Estimating genotype error rates from high-coverage next-generation sequence data

Exonuclease mutations in DNA polymerase epsilon reveal replication strand specific mutation patterns and human origins of replication

Heterogeneous polymerase fidelity and mismatch repair bias genome variation and composition

RNA-seq of 272 gliomas revealed a novel, recurrent PTPRZ1-MET fusion transcript in secondary glioblastomas

Widespread intron retention in mammals functionally tunes transcriptomes

Cell fate inclination within 2-cell and 4-cell mouse embryos revealed by single-cell RNA sequencing

High-resolution mapping of transcriptional dynamics across tissue development reveals a stable mRNA–tRNA interface

H3S28 phosphorylation is a hallmark of the transcriptional response to cellular stress

Environmentally responsive genome-wide accumulation of de novo Arabidopsis thaliana mutations and epimutations

Preservation of genetic and regulatory robustness in ancient gene duplicates of Saccharomyces cerevisiae

Methods

Application of histone modification-specific interaction domains as an alternative to antibodies

Unbiased analysis of potential targets of breast cancer susceptibility loci by Capture Hi-C

Linking signaling pathways to transcriptional programs in breast cancer

TITAN: inference of copy number architectures in clonal cell populations from tumor whole-genome sequence data

Resource

The landscape of human STR variation

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