Table of Contents

August 2001; 11 (8)

INSIGHT/OUTLOOK

  • The Search for Meaning in Noncoding DNA

    • Andrew G. Clark
    Genome Res. August 1, 2001 11: 1319-1320; doi:10.1101/gr.201601

  • Transposon-Induced Hotspots for Genomic Instability

    • Margaret G. Kidwell and
    • Andrew J. Holyoake
    Genome Res. August 1, 2001 11: 1321-1322; doi:10.1101/gr.201201

  • SAGE Thoughts on Aging

    • Thomas E. Johnson
    Genome Res. August 1, 2001 11: 1323-1324; doi:10.1101/gr.201101

ARTICLES

  • Gene Targeting of Desrt, a Novel ARID Class DNA-Binding Protein, Causes Growth Retardation and Abnormal Development of Reproductive Organs

    • Mireille H. Lahoud,
    • Sika Ristevski,
    • Deon J. Venter,
    • Lars S. Jermiin,
    • Ivan Bertoncello,
    • Silva Zavarsek,
    • Sue Hasthorpe,
    • John Drago,
    • David de Kretser,
    • Paul J. Hertzog,
    • and Ismail Kola
    Genome Res. August 1, 2001 11: 1327-1334; Published in Advance July 12, 2001, doi:10.1101/gr.168801

  • Analysis of Conserved Noncoding DNA in Drosophila Reveals Similar Constraints in Intergenic and Intronic Sequences

    • Casey M. Bergman and
    • Martin Kreitman
    Genome Res. August 1, 2001 11: 1335-1345; doi:10.1101/gr.178701

  • Changes in Gene Expression Associated with Developmental Arrest and Longevity in Caenorhabditis elegans

    • Steven J.M. Jones,
    • Donald L. Riddle,
    • Anatoli T. Pouzyrev,
    • Victor E. Velculescu,
    • LaDeana Hillier,
    • Sean R. Eddy,
    • Shawn L. Stricklin,
    • David L. Baillie,
    • Robert Waterston,
    • and Marco A. Marra
    Genome Res. August 1, 2001 11: 1346-1352; Published in Advance July 12, 2001, doi:10.1101/gr.184401

LETTERS

  • Molecular Characterization of Two Natural Hotspots in the Drosophila buzzatii Genome Induced by Transposon Insertions

    • Mario Cáceres,
    • Marta Puig,
    • and Alfredo Ruiz
    Genome Res. August 1, 2001 11: 1353-1364; Published in Advance July 12, 2001, doi:10.1101/gr.174001

  • Prokaryotic Homologs of the Eukaryotic DNA-End-Binding Protein Ku, Novel Domains in the Ku Protein and Prediction of a Prokaryotic Double-Strand Break Repair System

    • L. Aravind and
    • Eugene V. Koonin
    Genome Res. August 1, 2001 11: 1365-1374; doi:10.1101/gr.181001

  • Divergence of Function in Sequence-Related Groups of Escherichia coli Proteins

    • Laila Alves Nahum and
    • Monica Riley
    Genome Res. August 1, 2001 11: 1375-1381; doi:10.1101/gr.180901

  • Sequence Variation Within the Fragile X Locus

    • Debra J. Mathews,
    • Carl Kashuk,
    • Gale Brightwell,
    • Evan E. Eichler,
    • and Aravinda Chakravarti
    Genome Res. August 1, 2001 11: 1382-1391; doi:10.1101/gr.172601

  • Gene Expression Profiling in Human Fetal Liver and Identification of Tissue- and Developmental-Stage-Specific Genes through Compiled Expression Profiles and Efficient Cloning of Full-Length cDNAs

    • Yongtao Yu,
    • Chenggang Zhang,
    • Gangqiao Zhou,
    • Songfeng Wu,
    • Xianghu Qu,
    • Handong Wei,
    • Guichun Xing,
    • Chunna Dong,
    • Yun Zhai,
    • Jinghong Wan,
    • Shuguang Ouyang,
    • Li Li,
    • Shaowen Zhang,
    • Kaixin Zhou,
    • Yinan Zhang,
    • Chutse Wu,
    • and Fuchu He
    Genome Res. August 1, 2001 11: 1392-1403; doi:10.1101/gr.175501

METHODS

  • Capturing Whole-Genome Characteristics in Short Sequences Using a Naïve Bayesian Classifier

    • Rickard Sandberg,
    • Gösta Winberg,
    • Carl-Ivar Bränden,
    • Alexander Kaske,
    • Ingemar Ernberg,
    • and Joakim Cöster
    Genome Res. August 1, 2001 11: 1404-1409; doi:10.1101/gr.186401

  • Prediction of Protein Functional Domains from Sequences Using Artificial Neural Networks

    • János Murvai,
    • Kristian Vlahoviček,
    • Csaba Szepesvári,
    • and Sándor Pongor
    Genome Res. August 1, 2001 11: 1410-1417; doi:10.1101/gr.168701

  • Flexible Use of High-Density Oligonucleotide Arrays for Single-Nucleotide Polymorphism Discovery and Validation

    • Shoulian Dong,
    • Eugene Wang,
    • Linda Hsie,
    • Yanxiang Cao,
    • Xiaogiong Chen,
    • and Thomas R. Gingeras
    Genome Res. August 1, 2001 11: 1418-1424; Published in Advance July 12, 2001, doi:10.1101/gr.171101

RESOURCES

  • Creating the Gene Ontology Resource: Design and Implementation

    • The Gene Ontology Consortium
    Genome Res. August 1, 2001 11: 1425-1433; doi:10.1101/gr.180801

  • A Marker-Dense Physical Map of the Bradyrhizobium japonicum Genome

    • Jeffrey P. Tomkins,
    • Todd C. Wood,
    • Minviluz G. Stacey,
    • John T. Loh,
    • Adam Judd,
    • Jose L. Goicoechea,
    • Gary Stacey,
    • Michael J. Sadowsky,
    • and Rod A. Wing
    Genome Res. August 1, 2001 11: 1434-1440; doi:10.1101/gr.185001

  • Computational and Experimental Analysis of Microsatellites in Rice (Oryza sativa L.): Frequency, Length Variation, Transposon Associations, and Genetic Marker Potential

    • Svetlana Temnykh,
    • Genevieve DeClerck,
    • Angelika Lukashova,
    • Leonard Lipovich,
    • Samuel Cartinhour,
    • and Susan McCouch
    Genome Res. August 1, 2001 11: 1441-1452; doi:10.1101/gr.184001

  • Virtual Genome Scan: A Tool for Restriction Landmark-Based Scanning of the Human Genome

    • Jean-Marie Rouillard,
    • Ayse E. Erson,
    • Rork Kuick,
    • Jun-ichi Asakawa,
    • Katharina Wimmer,
    • Martine Muleris,
    • Elizabeth M. Petty,
    • and Samir Hanash
    Genome Res. August 1, 2001 11: 1453-1459; Published in Advance July 12, 2001, doi:10.1101/gr.181601
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This Issue

August 2001; 11 (8)
Cover
  1. INSIGHT/OUTLOOK
  2. ARTICLES
  3. LETTERS
  4. METHODS
  5. RESOURCES

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