Table of Contents

July 2001; 11 (7)

INSIGHT/OUTLOOK

  • Identifying Functional Elements by Comparative DNA Sequence Analysis

    • Martin Tompa
    Genome Res. July 1, 2001 11: 1143-1144; doi:10.1101/gr.197101

  • Microsatellites in the Eukaryotic DNA Mismatch Repair Genes as Modulators of Evolutionary Mutation Rate

    • Dong Kyung Chang,
    • David Metzgar,
    • Christopher Wills,
    • and C. Richard Boland
    Genome Res. July 1, 2001 11: 1145-1146; doi:10.1101/gr.186301

  • Systematic Analysis of DNA Microarray Data: Ordering and Interpreting Patterns of Gene Expression

    • Paul J. Planet,
    • Rob DeSalle,
    • Mark Siddall,
    • Timothy Bael,
    • Indra Neil Sarkar,
    • and Scott E. Stanley
    Genome Res. July 1, 2001 11: 1149-1155; doi:10.1101/gr.187601

REVIEW

  • The Human ATP-Binding Cassette (ABC) Transporter Superfamily

    • Michael Dean,
    • Andrey Rzhetsky,
    • and Rando Allikmets
    Genome Res. July 1, 2001 11: 1156-1166; Published in Advance January 18, 2001, doi:10.1101/gr.184901

REPORT

  • Conservation of Microstructure between a Sequenced Region of the Genome of Rice and Multiple Segments of the Genome of Arabidopsis thaliana

    • Klaus Mayer,
    • George Murphy,
    • Renato Tarchini,
    • Rolf Wambutt,
    • Guido Volckaert,
    • Thomas Pohl,
    • Andreas Düsterhöft,
    • Willem Stiekema,
    • Karl-Dieter Entian,
    • Nancy Terryn,
    • Kai Lemcke,
    • Dirk Haase,
    • Caroline R. Hall,
    • Anne-Marie van Dodeweerd,
    • Scott V. Tingey,
    • Hans-Werner Mewes,
    • Michael W. Bevan,
    • and Ian Bancroft
    Genome Res. July 1, 2001 11: 1167-1174; Published in Advance June 12, 2001, doi:10.1101/gr.161701

ARTICLES

  • Surveying Saccharomyces Genomes to Identify Functional Elements by Comparative DNA Sequence Analysis

    • Paul F. Cliften,
    • LaDeana W. Hillier,
    • Lucinda Fulton,
    • Tina Graves,
    • Tracie Miner,
    • Warren R. Gish,
    • Robert H. Waterston,
    • and Mark Johnston
    Genome Res. July 1, 2001 11: 1175-1186; doi:10.1101/gr.182901

  • Phylogenetic Analysis of Ribonuclease H Domains Suggests a Late, Chimeric Origin of LTR Retrotransposable Elements and Retroviruses

    • Harmit S. Malik and
    • Thomas H. Eickbush
    Genome Res. July 1, 2001 11: 1187-1197; doi:10.1101/gr.185101

LETTERS

  • Temporal Gene Regulation During HIV-1 Infection of Human CD4+ T Cells

    • Jacques Corbeil,
    • Dennis Sheeter,
    • Davide Genini,
    • Steffney Rought,
    • Lorenzo Leoni,
    • Pinyi Du,
    • Mark Ferguson,
    • Daniel R. Masys,
    • John B. Welsh,
    • J. Lynn Fink,
    • Roman Sasik,
    • David Huang,
    • Jorg Drenkow,
    • Douglas D. Richman,
    • and Thomas Gingeras
    Genome Res. July 1, 2001 11: 1198-1204; Published in Advance June 12, 2001, doi:10.1101/gr.180201

  • The Evolutionary Chromosome Translocation 4;19 in Gorilla gorilla is Associated with Microduplication of the Chromosome Fragment Syntenic to Sequences Surrounding the Human Proximal CMT1A-REP

    • Pawel Stankiewicz,
    • Sung-Sup Park,
    • Ken Inoue,
    • and James R. Lupski
    Genome Res. July 1, 2001 11: 1205-1210; doi:10.1101/gr.181101

  • The Repertoire of Na,K-ATPase α and β Subunit Genes Expressed in the Zebrafish, Danio rerio

    • S. Johannes R. Rajarao,
    • Victor A. Canfield,
    • Manzoor-Ali P.K. Mohideen,
    • Yi-Lin Yan,
    • John H. Postlethwait,
    • Keith C. Cheng,
    • and Robert Levenson
    Genome Res. July 1, 2001 11: 1211-1220; doi:10.1101/gr.186001

  • Linkage Disequilibrium Between Microsatellite Markers Extends Beyond 1 cM on Chromosome 20 in Finns

    • Karen L. Mohlke,
    • Ethan M. Lange,
    • Timo T. Valle,
    • Soumitra Ghosh,
    • Victoria L. Magnuson,
    • Kaisa Silander,
    • Richard M. Watanabe,
    • Peter S. Chines,
    • Richard N. Bergman,
    • Jaakko Tuomilehto,
    • Francis S. Collins,
    • and Michael Boehnke
    Genome Res. July 1, 2001 11: 1221-1226; doi:10.1101/gr.173201

METHODS

  • An Efficient and Robust Statistical Modeling Approach to Discover Differentially Expressed Genes Using Genomic Expression Profiles

    • Jeffrey G. Thomas,
    • James M. Olson,
    • Stephen J. Tapscott,
    • and Lue Ping Zhao
    Genome Res. July 1, 2001 11: 1227-1236; doi:10.1101/gr.165101

  • Predicting Splice Variant from DNA Chip Expression Data

    • Gang Ken Hu,
    • Steven J Madore,
    • Brian Moldover,
    • Tim Jatkoe,
    • David Balaban,
    • Jeffrey Thomas,
    • and Yixin Wang
    Genome Res. July 1, 2001 11: 1237-1245; doi:10.1101/gr.165501

  • Phenotype MicroArrays for High-Throughput Phenotypic Testing and Assay of Gene Function

    • Barry R. Bochner,
    • Peter Gadzinski,
    • and Eugenia Panomitros
    Genome Res. July 1, 2001 11: 1246-1255; doi:10.1101/gr.186501

  • Arrays of Arrays for High-Throughput Gene Expression Profiling

    • Patrick P. Zarrinkar,
    • James K. Mainquist,
    • Matthew Zamora,
    • David Stern,
    • John B. Welsh,
    • Lisa M. Sapinoso,
    • Garret M. Hampton,
    • and David J. Lockhart
    Genome Res. July 1, 2001 11: 1256-1261; Published in Advance June 12, 2001, doi:10.1101/gr.174801

  • High-Throughput Genotyping with Single Nucleotide Polymorphisms

    • Koustubh Ranade,
    • Mau-Song Chang,
    • Chih-Tai Ting,
    • Dee Pei,
    • Chin-Fu Hsiao,
    • Michael Olivier,
    • Robert Pesich,
    • Joan Hebert,
    • Yii-Der I. Chen,
    • Victor J. Dzau,
    • David Curb,
    • Richard Olshen,
    • Neil Risch,
    • David R. Cox,
    • and David Botstein
    Genome Res. July 1, 2001 11: 1262-1268; Published in Advance June 12, 2001, doi:10.1101/gr.157801

  • High-Throughput Plasmid Purification for Capillary Sequencing

    • Christopher J. Elkin,
    • Paul M. Richardson,
    • H. Matthew Fourcade,
    • Nancy M. Hammon,
    • Martin J. Pollard,
    • Paul F. Predki,
    • Tijana Glavina,
    • and Trevor L. Hawkins
    Genome Res. July 1, 2001 11: 1269-1274; doi:10.1101/gr.167801

RESOURCES

  • An Enhanced Linkage Map of the Sheep Genome Comprising More Than 1000 Loci

    • Jillian F. Maddox,
    • Kizanne P. Davies,
    • Allan M. Crawford,
    • Dennis J. Hulme,
    • Daniel Vaiman,
    • Edmond P. Cribiu,
    • Bradley A. Freking,
    • Ken J. Beh,
    • Noelle E. Cockett,
    • Nina Kang,
    • Christopher D. Riffkin,
    • Roger Drinkwater,
    • Stephen S. Moore,
    • Ken G. Dodds,
    • Joanne M. Lumsden,
    • Tracey C. van Stijn,
    • Sin H. Phua,
    • David L. Adelson,
    • Heather R. Burkin,
    • Judith E. Broom,
    • Johannes Buitkamp,
    • Lisa Cambridge,
    • William T. Cushwa,
    • Emily Gerard,
    • Susan M. Galloway,
    • Blair Harrison,
    • Rachel J. Hawken,
    • Stefan Hiendleder,
    • Hannah M. Henry,
    • Juan F. Medrano,
    • Korena A. Paterson,
    • Laurent Schibler,
    • Roger T. Stone,
    • and Beryl van Hest
    Genome Res. July 1, 2001 11: 1275-1289; Published in Advance June 12, 2001, doi:10.1101/gr.135001

  • A Sequence-Based Integrated Map of Chromosome 22

    • William J. Tapper,
    • Newton E. Morton,
    • Ian Dunham,
    • Xiayi Ke,
    • and Andrew Collins
    Genome Res. July 1, 2001 11: 1290-1295; doi:10.1101/gr.161301

  • Massive Sequence Comparisons as a Help in Annotating Genomic Sequences

    • Alexandra Louis,
    • Emmanuelle Ollivier,
    • Jean-Christophe Aude,
    • and Jean-Loup Risler
    Genome Res. July 1, 2001 11: 1296-1303; Published in Advance June 12, 2001, doi:10.1101/gr.177601

  • Toward High-Throughput Genotyping: Dynamic and Automatic Software for Manipulating Large-Scale Genotype Data Using Fluorescently Labeled Dinucleotide Markers

    • Jin-Long Li,
    • Hongyi Deng,
    • Dong-Bing Lai,
    • Fuhua Xu,
    • Jian Chen,
    • Guimin Gao,
    • Robert R. Recker,
    • and Hong-Wen Deng
    Genome Res. July 1, 2001 11: 1304-1314; doi:10.1101/gr.159701

ERRATA

  • Errata for vol. 11, p. 645

    Genome Res. July 1, 2001 11: 1315; doi:10.1101/gr.11.7.1315

  • Errata for vol. 11, p. 667

    Genome Res. July 1, 2001 11: 1315; doi:10.1101/gr.11.7.1315/a

  • Errata for vol. 11, p. 677

    Genome Res. July 1, 2001 11: 1315; doi:10.1101/gr.11.7.1315/b

  • Errata for vol. 11, p. 817

    Genome Res. July 1, 2001 11: 1315; doi:10.1101/gr.11.7.1315/c

  • Errata for vol. 11, p. 901

    Genome Res. July 1, 2001 11: 1315; doi:10.1101/gr.11.7.1315/d
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This Issue

July 2001; 11 (7)
Cover
  1. INSIGHT/OUTLOOK
  2. REVIEW
  3. REPORT
  4. ARTICLES
  5. LETTERS
  6. METHODS
  7. RESOURCES
  8. ERRATA

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