Table of Contents

December 2001; 11 (12)

COMMENTARIES

  • Is There a Bias in Proteome Research?

    • Ralf Mrowka,
    • Andreas Patzak,
    • and Hanspeter Herzel
    Genome Res. December 1, 2001 11: 1971-1973; doi:10.1101/gr.206701

  • Most of the Human Genome Is Transcribed

    • Gane Ka-Shu Wong,
    • Douglas A. Passey,
    • and Jun Yu
    Genome Res. December 1, 2001 11: 1975-1977; doi:10.1101/gr.202401

ARTICLES

  • A Gene Expression Screen in Zebrafish Embryogenesis

    • Tetsuhiro Kudoh,
    • Michael Tsang,
    • Neil A. Hukriede,
    • Xiongfong Chen,
    • Michael Dedekian,
    • Christopher J. Clarke,
    • Anne Kiang,
    • Stephanie Schultz,
    • Jonathan A. Epstein,
    • Reiko Toyama,
    • and Igor B. Dawid
    Genome Res. December 1, 2001 11: 1979-1987; Published in Advance November 12, 2001, doi:10.1101/gr.209601

  • Genomic Dissection of Genotype × Environment Interactions Conferring Adaptation of Cotton to Arid Conditions

    • Yehoshua Saranga,
    • Mónica Menz,
    • Chun-Xiao Jiang,
    • Robert J. Wright,
    • Dan Yakir,
    • and Andrew H. Paterson
    Genome Res. December 1, 2001 11: 1988-1995; doi:10.1101/gr.157201

  • Novel Protein Domains and Repeats in Drosophila melanogaster: Insights into Structure, Function, and Evolution

    • Chris P. Ponting,
    • Richard Mott,
    • Peer Bork,
    • and Richard R. Copley
    Genome Res. December 1, 2001 11: 1996-2008; Published in Advance November 12, 2001, doi:10.1101/gr.198701

  • Evolution of Gene Order in the Genomes of Two Related Yeast Species

    • Gilles Fischer,
    • Cécile Neuvéglise,
    • Pascal Durrens,
    • Claude Gaillardin,
    • and Bernard Dujon
    Genome Res. December 1, 2001 11: 2009-2019; doi:10.1101/gr.212701

LETTERS

  • Comparative Genomics Between Rice and Arabidopsis Shows Scant Collinearity in Gene Order

    • Hong Liu,
    • Ravi Sachidanandam,
    • and Lincoln Stein
    Genome Res. December 1, 2001 11: 2020-2026; doi:10.1101/gr.194501

  • Identification of Wound Healing/Regeneration Quantitative Trait Loci (QTL) at Multiple Time Points that Explain Seventy Percent of Variance in (MRL/MpJ and SJL/J) Mice F2 Population

    • Godfred L. Masinde,
    • Xinmin Li,
    • Weikuan Gu,
    • Heather Davidson,
    • Subburaman Mohan,
    • and David J. Baylink
    Genome Res. December 1, 2001 11: 2027-2033; doi:10.1101/gr.203701

  • Identification of Genes Encoding Amino Acid Permeases by Inactivation of Selected ORFs from the Synechocystis Genomic Sequence

    • Marı́a José Quintero,
    • Marı́a Luz Montesinos,
    • Antonia Herrero,
    • and Enrique Flores
    Genome Res. December 1, 2001 11: 2034-2040; doi:10.1101/gr.196301

  • Envelope-Class Retrovirus-Like Elements Are Widespread, Transcribed and Spliced, and Insertionally Polymorphic in Plants

    • Carlos M. Vicient,
    • Ruslan Kalendar,
    • and Alan H. Schulman
    Genome Res. December 1, 2001 11: 2041-2049; doi:10.1101/gr.193301

  • Genomic Characterization of Recent Human LINE-1 Insertions: Evidence Supporting Random Insertion

    • Igor Ovchinnikov,
    • Andrea B. Troxel,
    • and Gary D. Swergold
    Genome Res. December 1, 2001 11: 2050-2058; Published in Advance November 12, 2001, doi:10.1101/gr.194701

  • Twin Priming: A Proposed Mechanism for the Creation of Inversions in L1 Retrotransposition

    • Eric M. Ostertag and
    • Haig H. Kazazian, Jr.
    Genome Res. December 1, 2001 11: 2059-2065; doi:10.1101/gr.205701

  • Evolutionary History of Cer Elements and Their Impact on the C. elegans Genome

    • Eric W. Ganko,
    • Kevin T. Fielman,
    • and John F. McDonald
    Genome Res. December 1, 2001 11: 2066-2074; doi:10.1101/gr.196201

  • QTL Analysis in a Complex Autopolyploid: Genetic Control of Sugar Content in Sugarcane

    • Ray Ming,
    • Sin-Chieh Liu,
    • Paul H. Moore,
    • James E. Irvine,
    • and Andrew H. Paterson
    Genome Res. December 1, 2001 11: 2075-2084; Published in Advance November 12, 2001, doi:10.1101/gr.198801

  • Comparative Sequence Analysis of the Imprinted Dlk1–Gtl2 Locus in Three Mammalian Species Reveals Highly Conserved Genomic Elements and Refines Comparison with the Igf2–H19 Region

    • Martina Paulsen,
    • Shuji Takada,
    • Neil A. Youngson,
    • Mehdi Benchaib,
    • Carole Charlier,
    • Karin Segers,
    • Michel Georges,
    • and Anne C. Ferguson-Smith
    Genome Res. December 1, 2001 11: 2085-2094; doi:10.1101/gr.206901

  • Differential Divergence of Three Human Pseudoautosomal Genes and Their Mouse Homologs: Implications for Sex Chromosome Evolution

    • Fernando Gianfrancesco,
    • Remo Sanges,
    • Teresa Esposito,
    • Sergio Tempesta,
    • Ercole Rao,
    • Gudrun Rappold,
    • Nicoletta Archidiacono,
    • Jennifer A.M. Graves,
    • Antonino Forabosco,
    • and Michele D'Urso
    Genome Res. December 1, 2001 11: 2095-2100; doi:10.1101/gr.197001

  • Evolution of Intron/Exon Structure of DEAD Helicase Family Genes in Arabidopsis, Caenorhabditis, and Drosophila

    • Nathalie Boudet,
    • Sébastien Aubourg,
    • Claire Toffano-Nioche,
    • Martin Kreis,
    • and Alain Lecharny
    Genome Res. December 1, 2001 11: 2101-2114; Published in Advance November 12, 2001, doi:10.1101/gr.200801

METHODS

  • Trimming, Weighting, and Grouping SNPs in Human Case-Control Association Studies

    • Josephine Hoh,
    • Anja Wille,
    • and Jurg Ott
    Genome Res. December 1, 2001 11: 2115-2119; doi:10.1101/gr.204001

  • Identification of Potential Interaction Networks Using Sequence-Based Searches for Conserved Protein-Protein Interactions or “Interologs”

    • Lisa R. Matthews,
    • Philippe Vaglio,
    • Jérôme Reboul,
    • Hui Ge,
    • Brian P. Davis,
    • James Garrels,
    • Sylvie Vincent,
    • and Marc Vidal
    Genome Res. December 1, 2001 11: 2120-2126; doi:10.1101/gr.205301

RESOURCES

  • The LN54 Radiation Hybrid Map of Zebrafish Expressed Sequences

    • Neil Hukriede,
    • Dan Fisher,
    • Jonathan Epstein,
    • Lucille Joly,
    • Patricia Tellis,
    • Yi Zhou,
    • Brad Barbazuk,
    • Kristine Cox,
    • Laura Fenton-Noriega,
    • Candace Hersey,
    • Jennifer Miles,
    • Xiaoming Sheng,
    • Anhua Song,
    • Rick Waterman,
    • Stephen L. Johnson,
    • Igor B. Dawid,
    • Mario Chevrette,
    • Leonard I. Zon,
    • John McPherson,
    • and Marc Ekker
    Genome Res. December 1, 2001 11: 2127-2132; Published in Advance November 12, 2001, doi:10.1101/gr.210601

  • Toward a Cytological Characterization of the Rice Genome

    • Zhukuan Cheng,
    • C. Robin Buell,
    • Rod A. Wing,
    • Minghong Gu,
    • and Jiming Jiang
    Genome Res. December 1, 2001 11: 2133-2141; doi:10.1101/gr.194601

  • Advanced Integrated Mouse YAC Map Including BAC Framework

    • Leonard C. Schalkwyk,
    • Brian Cusack,
    • Ilona Dunkel,
    • Martina Hopp,
    • Markus Kramer,
    • Stefanie Palczewski,
    • Jutta Piefke,
    • Sabine Scheel,
    • Michael Weiher,
    • Gunther Wenske,
    • Hans Lehrach,
    • and Heinz Himmelbauer
    Genome Res. December 1, 2001 11: 2142-2150; doi:10.1101/gr.176201

  • GeneLynx: A Gene-Centric Portal to the Human Genome

    • Boris Lenhard,
    • William S. Hayes,
    • and Wyeth W. Wasserman
    Genome Res. December 1, 2001 11: 2151-2157; doi:10.1101/gr.199801
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This Issue

December 2001; 11 (12)
Cover
  1. COMMENTARIES
  2. ARTICLES
  3. LETTERS
  4. METHODS
  5. RESOURCES

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