Diversity, duplication, and genomic organization of homeobox genes in Lepidoptera
- First Published December 8, 2022
Deep sequencing of short capped RNAs reveals novel families of noncoding RNAs
- First Published August 12, 2022
Chromatin activation as a unifying principle underlying pathogenic mechanisms in multiple myeloma
- First Published August 20, 2020
A chromosome-level assembly of the Atlantic herring genome—detection of a supergene and other signals of selection
- First Published October 24, 2019
Chromosome assembly of large and complex genomes using multiple references
- First Published October 19, 2018
Co-expression networks reveal the tissue-specific regulation of transcription and splicing
- First Published October 11, 2017
Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly
- First Published April 10, 2017
The frequent evolutionary birth and death of functional promoters in mouse and human
- First Published July 30, 2015
Spatial enhancer clustering and regulation of enhancer-proximal genes by cohesin
- First Published February 12, 2015
Whole-epigenome analysis in multiple myeloma reveals DNA hypermethylation of B cell-specific enhancers
- First Published February 2, 2015
Decoupling of evolutionary changes in transcription factor binding and gene expression in mammals
- First Published November 13, 2014
Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal
- First Published October 7, 2014
Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments
- First Published September 3, 2013
Unamplified cap analysis of gene expression on a single-molecule sequencer
- First Published May 19, 2011
The genome sequence of the spontaneously hypertensive rat: Analysis and functional significance
- First Published April 29, 2010
Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries
- First Published January 5, 2010
Functional diversity for REST (NRSF) is defined by in vivo binding affinity hierarchies at the DNA sequence level
- First Published April 28, 2009
Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE
- First Published December 11, 2008
Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
- First Published February 7, 2008
The landscape of histone modifications across 1% of the human genome in five human cell lines
- First Published June 13, 2007
Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome
- First Published December 12, 2005
Disclosing hidden transcripts: Mouse natural sense–antisense transcripts tend to be poly(A) negative and nuclear localized
- First Published March 21, 2005
The Mouse Secretome: Functional Classification of the Proteins Secreted Into the Extracellular Environment
- First Published June 2, 2003
Analysis of the Mouse Transcriptome for Genes Involved in the Function of the Nervous System
- First Published June 2, 2003
Discovery of Imprinted Transcripts in the Mouse Transcriptome Using Large-Scale Expression Profiling
- First Published June 2, 2003
The Mammalian Protein–Protein Interaction Database and Its Viewing System That Is Linked to the Main FANTOM2 Viewer
- First Published June 2, 2003
Development and Evaluation of an Automated Annotation Pipeline and cDNA Annotation System
- First Published June 2, 2003
Targeting a Complex Transcriptome: The Construction of the Mouse Full-Length cDNA Encyclopedia
- First Published June 2, 2003
Identification of Putative Noncoding RNAs Among the RIKEN Mouse Full-Length cDNA Collection
- First Published June 2, 2003
Systematic Expression Profiling of the Mouse Transcriptome Using RIKEN cDNA Microarrays
- First Published June 2, 2003
Antisense Transcripts With FANTOM2 Clone Set and Their Implications for Gene Regulation
- First Published June 2, 2003
Comprehensive Analysis of the Mouse Metabolome Based on the Transcriptome
- First Published June 2, 2003
Leveraging the Mouse Genome for Gene Prediction in Human: From Whole-Genome Shotgun Reads to a Global Synteny Map
- First Published January 1, 2003
Inferring Alternative Splicing Patterns in Mouse from a Full-Length cDNA Library and Microarray Data
- First Published July 19, 2002
RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer
- First Published November 1, 2000
Bacterial Artificial Chromosome Libraries for Mouse Sequencing and Functional Analysis
- First Published January 1, 2000