Table of Contents

March 2021; 31 (3)

Research

  • Blood-derived mitochondrial DNA copy number is associated with gene expression across multiple tissues and is predictive for incident neurodegenerative disease

    • Stephanie Y. Yang,
    • Christina A. Castellani,
    • Ryan J. Longchamps,
    • Vamsee K. Pillalamarri,
    • Brian O'Rourke,
    • Eliseo Guallar,
    • and Dan E. Arking
    Genome Res. March 2021 31: 349-358; Published in Advance January 13, 2021, doi:10.1101/gr.269381.120

  • Allele-specific alternative splicing and its functional genetic variants in human tissues

    • Kofi Amoah,
    • Yun-Hua Esther Hsiao,
    • Jae Hoon Bahn,
    • Yiwei Sun,
    • Christina Burghard,
    • Boon Xin Tan,
    • Ei-Wen Yang,
    • and Xinshu Xiao
    Genome Res. March 2021 31: 359-371; Published in Advance January 15, 2021, doi:10.1101/gr.265637.120

  • Fixation of allelic gene expression landscapes and expression bias pattern shape the transcriptome of the clonal Amazon molly

    • Yuan Lu,
    • David Bierbach,
    • Jenny Ormanns,
    • Wesley C. Warren,
    • Ronald B. Walter,
    • and Manfred Schartl
    Genome Res. March 2021 31: 372-379; Published in Advance February 5, 2021, doi:10.1101/gr.268870.120
    OPEN ACCESS ARTICLE

  • Evolution of genome structure in the Drosophila simulans species complex

    • Mahul Chakraborty,
    • Ching-Ho Chang,
    • Danielle E. Khost,
    • Jeffrey Vedanayagam,
    • Jeffrey R. Adrion,
    • Yi Liao,
    • Kristi L. Montooth,
    • Colin D. Meiklejohn,
    • Amanda M. Larracuente,
    • and J.J. Emerson
    Genome Res. March 2021 31: 380-396; Published in Advance February 9, 2021, doi:10.1101/gr.263442.120
    OPEN ACCESS ARTICLE

  • Topologically associating domains and their role in the evolution of genome structure and function in Drosophila

    • Yi Liao,
    • Xinwen Zhang,
    • Mahul Chakraborty,
    • and J.J. Emerson
    Genome Res. March 2021 31: 397-410; Published in Advance February 9, 2021, doi:10.1101/gr.266130.120

  • Sir3 mediates long-range chromosome interactions in budding yeast

    • Myriam Ruault,
    • Vittore F. Scolari,
    • Luciana Lazar-Stefanita,
    • Antoine Hocher,
    • Isabelle Loïodice,
    • Romain Koszul,
    • and Angela Taddei
    Genome Res. March 2021 31: 411-425; Published in Advance February 12, 2021, doi:10.1101/gr.267872.120

  • Rtt109 slows replication speed by histone N-terminal acetylation

    • Nelly Frenkel,
    • Felix Jonas,
    • Miri Carmi,
    • Gilad Yaakov,
    • and Naama Barkai
    Genome Res. March 2021 31: 426-435; Published in Advance February 9, 2021, doi:10.1101/gr.266510.120

  • Abundantly expressed class of noncoding RNAs conserved through the multicellular evolution of dictyostelid social amoebas

    • Jonas Kjellin,
    • Lotta Avesson,
    • Johan Reimegård,
    • Zhen Liao,
    • Ludwig Eichinger,
    • Angelika Noegel,
    • Gernot Glöckner,
    • Pauline Schaap,
    • and Fredrik Söderbom
    Genome Res. March 2021 31: 436-447; Published in Advance January 21, 2021, doi:10.1101/gr.272856.120
    OPEN ACCESS ARTICLE

Methods

  • Accurate and efficient detection of gene fusions from RNA sequencing data

    • Sebastian Uhrig,
    • Julia Ellermann,
    • Tatjana Walther,
    • Pauline Burkhardt,
    • Martina Fröhlich,
    • Barbara Hutter,
    • Umut H. Toprak,
    • Olaf Neumann,
    • Albrecht Stenzinger,
    • Claudia Scholl,
    • Stefan Fröhling,
    • and Benedikt Brors
    Genome Res. March 2021 31: 448-460; Published in Advance January 13, 2021, doi:10.1101/gr.257246.119
    OPEN ACCESS ARTICLE

  • Enhancing CRISPR deletion via pharmacological delay of DNA-PKcs

    • Núria Bosch-Guiteras,
    • Tina Uroda,
    • Hugo A. Guillen-Ramirez,
    • Rahel Riedo,
    • Amiq Gazdhar,
    • Roberta Esposito,
    • Carlos Pulido-Quetglas,
    • Yitzhak Zimmer,
    • Michaela Medová,
    • and Rory Johnson
    Genome Res. March 2021 31: 461-471; Published in Advance February 11, 2021, doi:10.1101/gr.265736.120
    OPEN ACCESS ARTICLE

  • A minimally destructive protocol for DNA extraction from ancient teeth

    • Éadaoin Harney,
    • Olivia Cheronet,
    • Daniel M. Fernandes,
    • Kendra Sirak,
    • Matthew Mah,
    • Rebecca Bernardos,
    • Nicole Adamski,
    • Nasreen Broomandkhoshbacht,
    • Kimberly Callan,
    • Ann Marie Lawson,
    • Jonas Oppenheimer,
    • Kristin Stewardson,
    • Fatma Zalzala,
    • Alexandra Anders,
    • Francesca Candilio,
    • Mihai Constantinescu,
    • Alfredo Coppa,
    • Ion Ciobanu,
    • János Dani,
    • Zsolt Gallina,
    • Francesco Genchi,
    • Emese Gyöngyvér Nagy,
    • Tamás Hajdu,
    • Magdolna Hellebrandt,
    • Antónia Horváth,
    • Ágnes Király,
    • Krisztián Kiss,
    • Barbara Kolozsi,
    • Péter Kovács,
    • Kitti Köhler,
    • Michaela Lucci,
    • Ildikó Pap,
    • Sergiu Popovici,
    • Pál Raczky,
    • Angela Simalcsik,
    • Tamás Szeniczey,
    • Sergey Vasilyev,
    • Cristian Virag,
    • Nadin Rohland,
    • David Reich,
    • and Ron Pinhasi
    Genome Res. March 2021 31: 472-483; Published in Advance February 12, 2021, doi:10.1101/gr.267534.120

Resources

  • Systematic detection of brain protein-coding genes under positive selection during primate evolution and their roles in cognition

    • Guillaume Dumas,
    • Simon Malesys,
    • and Thomas Bourgeron
    Genome Res. March 2021 31: 484-496; Published in Advance January 13, 2021, doi:10.1101/gr.262113.120
    OPEN ACCESS ARTICLE

  • A new emu genome illuminates the evolution of genome configuration and nuclear architecture of avian chromosomes

    • Jing Liu,
    • Zongji Wang,
    • Jing Li,
    • Luohao Xu,
    • Jiaqi Liu,
    • Shaohong Feng,
    • Chunxue Guo,
    • Shengchan Chen,
    • Zhanjun Ren,
    • Jinpeng Rao,
    • Kai Wei,
    • Yuezhou Chen,
    • Erich D. Jarvis,
    • Guojie Zhang,
    • and Qi Zhou
    Genome Res. March 2021 31: 497-511; Published in Advance January 6, 2021, doi:10.1101/gr.271569.120

  • A mosquito small RNA genomics resource reveals dynamic evolution and host responses to viruses and transposons

    • Qicheng Ma,
    • Satyam P. Srivastav,
    • Stephanie Gamez,
    • Gargi Dayama,
    • Fabiana Feitosa-Suntheimer,
    • Edward I. Patterson,
    • Rebecca M. Johnson,
    • Erik M. Matson,
    • Alexander S. Gold,
    • Douglas E. Brackney,
    • John H. Connor,
    • Tonya M. Colpitts,
    • Grant L. Hughes,
    • Jason L. Rasgon,
    • Tony Nolan,
    • Omar S. Akbari,
    • and Nelson C. Lau
    Genome Res. March 2021 31: 512-528; Published in Advance January 8, 2021, doi:10.1101/gr.265157.120
    OPEN ACCESS ARTICLE
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This Issue

March 2021; 31 (3)
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  1. Research
  2. Methods
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