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  Unique mutation portraits and frequent COL2A1 gene alteration in chondrosarcoma

  • Yasushi Totoki,
  • Akihiko Yoshida,
  • Fumie Hosoda,
  • Hiromi Nakamura,
  • Natsuko Hama,
  • Koichi Ogura,
  • Aki Yoshida,
  • Tomohiro Fujiwara,
  • Yasuhito Arai,
  • Junya Toguchida,
  • Hitoshi Tsuda,
  • Satoru Miyano,
  • Akira Kawai,
  • and Tatsuhiro Shibata

  Genome Res. September 2014 24: 1411-1420; Published in Advance July 14, 2014, doi:10.1101/gr.160598.113
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  Reconfiguration of nucleosome-depleted regions at distal regulatory elements accompanies DNA methylation of enhancers and insulators in cancer

  • Phillippa C. Taberlay,
  • Aaron L. Statham,
  • Theresa K. Kelly,
  • Susan J. Clark,
  • and Peter A. Jones

  Genome Res. September 2014 24: 1421-1432; Published in Advance June 10, 2014, doi:10.1101/gr.163485.113
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  Interactive transcriptome analysis of malaria patients and infecting Plasmodium falciparum

  • Junya Yamagishi,
  • Anna Natori,
  • Mohammed E.M. Tolba,
  • Arthur E. Mongan,
  • Chihiro Sugimoto,
  • Toshiaki Katayama,
  • Shuichi Kawashima,
  • Wojciech Makalowski,
  • Ryuichiro Maeda,
  • Yuki Eshita,
  • Josef Tuda,
  • and Yutaka Suzuki

  Genome Res. September 2014 24: 1433-1444; Published in Advance August 4, 2014, doi:10.1101/gr.158980.113
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  Error-prone polymerase activity causes multinucleotide mutations in humans

  • Kelley Harris and
  • Rasmus Nielsen

  Genome Res. September 2014 24: 1445-1454; Published in Advance July 30, 2014, doi:10.1101/gr.170696.113
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  Novel H3K4me3 marks are enriched at human- and chimpanzee-specific cytogenetic structures

  • Giuliana Giannuzzi,
  • Eugenia Migliavacca,
  • and Alexandre Reymond

  Genome Res. September 2014 24: 1455-1468; Published in Advance June 10, 2014, doi:10.1101/gr.167742.113
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  Noncoding origins of anthropoid traits and a new null model of transposon functionalization

  • Ricardo C.H. del Rosario,
  • Nirmala Arul Rayan,
  • and Shyam Prabhakar

  Genome Res. September 2014 24: 1469-1484; Published in Advance July 20, 2014, doi:10.1101/gr.168963.113
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  Extreme expansion of the olfactory receptor gene repertoire in African elephants and evolutionary dynamics of orthologous gene groups in 13 placental mammals

  • Yoshihito Niimura,
  • Atsushi Matsui,
  • and Kazushige Touhara

  Genome Res. September 2014 24: 1485-1496; Published in Advance July 22, 2014, doi:10.1101/gr.169532.113
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  Gene length and expression level shape genomic novelties

  • Vladislav Grishkevich and
  • Itai Yanai

  Genome Res. September 2014 24: 1497-1503; Published in Advance July 11, 2014, doi:10.1101/gr.169722.113
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  Microbiota modulate transcription in the intestinal epithelium without remodeling the accessible chromatin landscape

  • J. Gray Camp,
  • Christopher L. Frank,
  • Colin R. Lickwar,
  • Harendra Guturu,
  • Tomas Rube,
  • Aaron M. Wenger,
  • Jenny Chen,
  • Gill Bejerano,
  • Gregory E. Crawford,
  • and John F. Rawls

  Genome Res. September 2014 24: 1504-1516; Published in Advance June 24, 2014, doi:10.1101/gr.165845.113
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  Methane yield phenotypes linked to differential gene expression in the sheep rumen microbiome

  • Weibing Shi,
  • Christina D. Moon,
  • Sinead C. Leahy,
  • Dongwan Kang,
  • Jeff Froula,
  • Sandra Kittelmann,
  • Christina Fan,
  • Samuel Deutsch,
  • Dragana Gagic,
  • Henning Seedorf,
  • William J. Kelly,
  • Renee Atua,
  • Carrie Sang,
  • Priya Soni,
  • Dong Li,
  • Cesar S. Pinares-Patiño,
  • John C. McEwan,
  • Peter H. Janssen,
  • Feng Chen,
  • Axel Visel,
  • Zhong Wang,
  • Graeme T. Attwood,
  • and Edward M. Rubin

  Genome Res. September 2014 24: 1517-1525; Published in Advance June 6, 2014, doi:10.1101/gr.168245.113
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