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  Loss of transcriptional control over endogenous retroelements during reprogramming to pluripotency

  • Marc Friedli,
  • Priscilla Turelli,
  • Adamandia Kapopoulou,
  • Benjamin Rauwel,
  • Nathaly Castro-Díaz,
  • Helen M. Rowe,
  • Gabriela Ecco,
  • Carmen Unzu,
  • Evarist Planet,
  • Angelo Lombardo,
  • Bastien Mangeat,
  • Barbara E. Wildhaber,
  • Luigi Naldini,
  • and Didier Trono

  Genome Res. August 2014 24: 1251-1259; Published in Advance May 30, 2014, doi:10.1101/gr.172809.114
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  Interplay of TRIM28 and DNA methylation in controlling human endogenous retroelements

  • Priscilla Turelli,
  • Nathaly Castro-Diaz,
  • Flavia Marzetta,
  • Adamandia Kapopoulou,
  • Charlène Raclot,
  • Julien Duc,
  • Vannary Tieng,
  • Simon Quenneville,
  • and Didier Trono

  Genome Res. August 2014 24: 1260-1270; Published in Advance May 30, 2014, doi:10.1101/gr.172833.114
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  Vascular histone deacetylation by pharmacological HDAC inhibition

  • Haloom Rafehi,
  • Aneta Balcerczyk,
  • Sebastian Lunke,
  • Antony Kaspi,
  • Mark Ziemann,
  • Harikrishnan KN,
  • Jun Okabe,
  • Ishant Khurana,
  • Jenny Ooi,
  • Abdul Waheed Khan,
  • Xiao-Jun Du,
  • Lisa Chang,
  • Izhak Haviv,
  • Samuel T. Keating,
  • Tom C. Karagiannis,
  • and Assam El-Osta

  Genome Res. August 2014 24: 1271-1284; Published in Advance April 14, 2014, doi:10.1101/gr.168781.113
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  Nucleosome repositioning links DNA (de)methylation and differential CTCF binding during stem cell development

  • Vladimir B. Teif,
  • Daria A. Beshnova,
  • Yevhen Vainshtein,
  • Caroline Marth,
  • Jan-Philipp Mallm,
  • Thomas Höfer,
  • and Karsten Rippe

  Genome Res. August 2014 24: 1285-1295; Published in Advance May 8, 2014, doi:10.1101/gr.164418.113
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  The dynamics of DNA methylation fidelity during mouse embryonic stem cell self-renewal and differentiation

  • Lei Zhao,
  • Ming-an Sun,
  • Zejuan Li,
  • Xue Bai,
  • Miao Yu,
  • Min Wang,
  • Liji Liang,
  • Xiaojian Shao,
  • Stephen Arnovitz,
  • Qianfei Wang,
  • Chuan He,
  • Xuemei Lu,
  • Jianjun Chen,
  • and Hehuang Xie

  Genome Res. August 2014 24: 1296-1307; Published in Advance May 16, 2014, doi:10.1101/gr.163147.113
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  Whole-genome sequencing of six dog breeds from continuous altitudes reveals adaptation to high-altitude hypoxia

  • Xiao Gou,
  • Zhen Wang,
  • Ning Li,
  • Feng Qiu,
  • Ze Xu,
  • Dawei Yan,
  • Shuli Yang,
  • Jia Jia,
  • Xiaoyan Kong,
  • Zehui Wei,
  • Shaoxiong Lu,
  • Linsheng Lian,
  • Changxin Wu,
  • Xueyan Wang,
  • Guozhi Li,
  • Teng Ma,
  • Qiang Jiang,
  • Xue Zhao,
  • Jiaqiang Yang,
  • Baohong Liu,
  • Dongkai Wei,
  • Hong Li,
  • Jianfa Yang,
  • Yulin Yan,
  • Guiying Zhao,
  • Xinxing Dong,
  • Mingli Li,
  • Weidong Deng,
  • Jing Leng,
  • Chaochun Wei,
  • Chuan Wang,
  • Huaming Mao,
  • Hao Zhang,
  • Guohui Ding,
  • and Yixue Li

  Genome Res. August 2014 24: 1308-1315; Published in Advance April 10, 2014, doi:10.1101/gr.171876.113
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  Population genomics of parallel hybrid zones in the mimetic butterflies, H. melpomene and H. erato

  • Nicola J. Nadeau,
  • Mayté Ruiz,
  • Patricio Salazar,
  • Brian Counterman,
  • Jose Alejandro Medina,
  • Humberto Ortiz-Zuazaga,
  • Anna Morrison,
  • W. Owen McMillan,
  • Chris D. Jiggins,
  • and Riccardo Papa

  Genome Res. August 2014 24: 1316-1333; Published in Advance May 13, 2014, doi:10.1101/gr.169292.113
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  Analysis of 41 plant genomes supports a wave of successful genome duplications in association with the Cretaceous–Paleogene boundary

  • Kevin Vanneste,
  • Guy Baele,
  • Steven Maere,
  • and Yves Van de Peer

  Genome Res. August 2014 24: 1334-1347; Published in Advance May 16, 2014, doi:10.1101/gr.168997.113
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  The impact of widespread regulatory neofunctionalization on homeolog gene evolution following whole-genome duplication in maize

  • Thomas E. Hughes,
  • Jane A. Langdale,
  • and Steven Kelly

  Genome Res. August 2014 24: 1348-1355; Published in Advance April 30, 2014, doi:10.1101/gr.172684.114
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  Genomic evidence for adaptation by gene duplication

  • Wenfeng Qian and
  • Jianzhi Zhang

  Genome Res. August 2014 24: 1356-1362; Published in Advance June 5, 2014, doi:10.1101/gr.172098.114
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  Heritability and genetic basis of protein level variation in an outbred population

  • Leopold Parts,
  • Yi-Chun Liu,
  • Manu M. Tekkedil,
  • Lars M. Steinmetz,
  • Amy A. Caudy,
  • Andrew G. Fraser,
  • Charles Boone,
  • Brenda J. Andrews,
  • and Adam P. Rosebrock

  Genome Res. August 2014 24: 1363-1370; Published in Advance May 13, 2014, doi:10.1101/gr.170506.113
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