Volume 34, Issue 8 | August 2024

Research
- - Widespread natural selection on metabolite levels in humans
    Yanina Timasheva
    Kaido Lepik
    Orsolya Liska
    Balázs Papp
    Zoltán Kutalik
    First Published August 16, 2024
  - Genome-wide patterns of selection–drift variation strongly associate with organismal traits across the green plant lineage
    Kavitha Uthanumallian
    Andrea Del Cortona
    Susana M. Coelho
    Olivier De Clerck
    Sebastian Duchene
    First Published August 29, 2024
  - Differences in activity and stability drive transposable element variation in tropical and temperate maize
    Shujun Ou
    Armin Scheben
    Tyler Collins
    Yinjie Qiu
    Arun S. Seetharam
    Claire C. Menard Nancy Manchanda Jonathan I. Gent
    ...[+3 authors]...,
    Michael C. Schatz
    Sarah N. Anderson
    Matthew B. Hufford
    Candice N. Hirsch
    First Published September 9, 2024
  - Colibactin leads to a bacteria-specific mutation pattern and self-inflicted DNA damage
    Emily Lowry
    Yiqing Wang
    Tal Dagan
    Amir Mitchell
    First Published August 16, 2024
Methods
- - A simple method for finding related sequences by adding probabilities of alternative alignments
    Martin C. Frith
    First Published August 16, 2024
  - A fast and adaptive detection framework for genome-wide chromatin loop mapping from Hi-C data
    Siyuan Chen
    Jiuming Wang
    Inkyung Jung
    Zhaowen Qiu
    Xin Gao
    First Published August 13, 2024
  - A novel approach for in vivo DNA footprinting using short double-stranded cell-free DNA from plasma
    Jan Müller
    Christina Hartwig
    Mirko Sonntag
    Lisa Bitzer
    Christopher Adelmann
    Yevhen Vainshtein Karolina Glanz Sebastian O. Decker
    ...[+3 authors]...,
    Thorsten Brenner
    Georg F. Weber
    Arndt von Haeseler
    Kai Sohn
    First Published September 13, 2024
  - Benchmarking bulk and single-cell variant-calling approaches on Chromium scRNA-seq and scATAC-seq libraries
    Matthew Wiens
    Hossein Farahani
    R. Wilder Scott
    T. Michael Underhill
    Ali Bashashati
    First Published August 15, 2024
  - Genetic complexity of killer-cell immunoglobulin-like receptor genes in human pangenome assemblies
    Tsung-Kai Hung
    Wan-Chi Liu
    Sheng-Kai Lai
    Hui-Wen Chuang
    Yi-Che Lee
    Hong-Ye Lin Chia-Lang Hsu
    ...[+2 authors]...,
    Chien-Yu Chen
    Ya-Chien Yang
    Jacob Shujui Hsu
    Pei-Lung Chen
    First Published September 9, 2024
Resources
- - Allele-specific transcription factor binding across human brain regions offers mechanistic insight into eQTLs
    Ashlyn G. Anderson
    Belle A. Moyers
    Jacob M. Loupe
    Ivan Rodriguez-Nunez
    Stephanie A. Felker
    James M.J. Lawlor William E. Bunney Blynn G. Bunney Preston M. Cartagena Adolfo Sequeira Stanley J. Watson
    ...[+6 authors]...,
    Huda Akil
    Eric M. Mendenhall
    Gregory M. Cooper
    Richard M. Myers
    First Published August 16, 2024
  - A spatiotemporally resolved atlas of mRNA decay in the C. elegans embryo reveals differential regulation of mRNA stability across stages and cell types
    Felicia Peng
    C. Erik Nordgren
    John Isaac Murray
    First Published August 14, 2024
  - Comprehensive identification of genomic and environmental determinants of phenotypic plasticity in maize
    Laura E. Tibbs-Cortes
    Tingting Guo
    Carson M. Andorf
    Xianran Li
    Jianming Yu
    First Published September 13, 2024

Table of Contents

Volume 34, Issue 8 | August 2024

Research

Widespread natural selection on metabolite levels in humans

Genome-wide patterns of selection–drift variation strongly associate with organismal traits across the green plant lineage

Differences in activity and stability drive transposable element variation in tropical and temperate maize

Colibactin leads to a bacteria-specific mutation pattern and self-inflicted DNA damage

Methods

A simple method for finding related sequences by adding probabilities of alternative alignments

A fast and adaptive detection framework for genome-wide chromatin loop mapping from Hi-C data

A novel approach for in vivo DNA footprinting using short double-stranded cell-free DNA from plasma

Benchmarking bulk and single-cell variant-calling approaches on Chromium scRNA-seq and scATAC-seq libraries

Genetic complexity of killer-cell immunoglobulin-like receptor genes in human pangenome assemblies

Resources

Allele-specific transcription factor binding across human brain regions offers mechanistic insight into eQTLs

A spatiotemporally resolved atlas of mRNA decay in the C. elegans embryo reveals differential regulation of mRNA stability across stages and cell types

Comprehensive identification of genomic and environmental determinants of phenotypic plasticity in maize

Table of Contents

Volume 34, Issue 8 | August 2024

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Research

Methods

Resources