Volume 34, Issue 7 | July 2024

Research
- - The Chinese longsnout catfish genome provides novel insights into the feeding preference and corresponding metabolic strategy of carnivores
    Yulong Liu
    Gang Zhai
    Jingzhi Su
    Yulong Gong
    Bingyuan Yang
    Qisheng Lu Longwei Xi Yutong Zheng Jingyue Cao Haokun Liu Junyan Jin Zhimin Zhang Yunxia Yang Xiaoming Zhu Zhongwei Wang Gaorui Gong Jie Mei
    ...[+12 authors]...,
    Zhan Yin
    Rodolphe E. Gozlan
    Shouqi Xie
    Dong Han
    First Published August 9, 2024
  - The grasshopper genome reveals long-term gene content conservation of the X Chromosome and temporal variation in X Chromosome evolution
    Xinghua Li
    Judith E. Mank
    Liping Ban
    First Published August 5, 2024
Methods
- - High-fidelity, large-scale targeted profiling of microsatellites
    Caitlin A. Loh
    Danielle A. Shields
    Adam Schwing
    Gilad D. Evrony
    First Published July 16, 2024
  - CodonBERT large language model for mRNA vaccines
    Sizhen Li
    Saeed Moayedpour
    Ruijiang Li
    Michael Bailey
    Saleh Riahi
    Lorenzo Kogler-Anele Milad Miladi Jacob Miner Fabien Pertuy Dinghai Zheng Jun Wang Akshay Balsubramani Khang Tran Minnie Zacharia Monica Wu Xiaobo Gu Ryan Clinton Carla Asquith Joseph Skaleski Lianne Boeglin Sudha Chivukula Anusha Dias Tod Strugnell
    ...[+18 authors]...,
    Fernando Ulloa Montoya
    Vikram Agarwal
    Ziv Bar-Joseph
    Sven Jager
    First Published July 1, 2024
  - A gene regulatory network–aware graph learning method for cell identity annotation in single-cell RNA-seq data
    Mengyuan Zhao
    Jiawei Li
    Xiaoyi Liu
    Ke Ma
    Jijun Tang
    First Published August 12, 2024
  - Reference-informed prediction of alternative splicing and splicing-altering mutations from sequences
    Chencheng Xu
    Suying Bao
    Ye Wang
    Wenxing Li
    Hao Chen
    First Published July 26, 2024
  - Delineating yeast cleavage and polyadenylation signals using deep learning
    Emily Kunce Stroup
    Zhe Ji
    First Published June 24, 2024
  - Pangenome-spanning epistasis and coselection analysis via de Bruijn graphs
    Juri Kuronen
    Samuel T. Horsfield
    Anna K. Pöntinen
    Sudaraka Mallawaarachchi
    Sergio Arredondo-Alonso
    Harry Thorpe Rebecca A. Gladstone Rob J.L. Willems Stephen D. Bentley Nicholas J. Croucher
    ...[+5 authors]...,
    Johan Pensar
    John A. Lees
    Gerry Tonkin-Hill
    Jukka Corander
    First Published August 12, 2024
Resources
- - Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes
    Guanjue Xiang
    Xi He
    Belinda M. Giardine
    Kathryn J. Isaac
    Dylan J. Taylor
    Rajiv C. McCoy Camden Jansen Cheryl A. Keller Alexander Q. Wixom April Cockburn Amber Miller Qian Qi Yanghua He Yichao Li Jens Lichtenberg Elisabeth F. Heuston Stacie M. Anderson Jing Luan Marit W. Vermunt Feng Yue Michael E.G. Sauria Michael C. Schatz James Taylor Berthold Göttgens Jim R. Hughes Douglas R. Higgs Mitchell J. Weiss Yong Cheng Gerd A. Blobel David M. Bodine
    ...[+25 authors]...,
    Yu Zhang
    Qunhua Li
    Shaun Mahony
    Ross C. Hardison
    First Published July 1, 2024
  - Streamlined spatial and environmental expression signatures characterize the minimalist duckweed Wolffia australiana
    Tom Denyer
    Pin-Jou Wu
    Kelly Colt
    Bradley W. Abramson
    Zhili Pang
    Pavel Solansky Allen Mamerto Tatsuya Nobori
    ...[+3 authors]...,
    Joseph R. Ecker
    Eric Lam
    Todd P. Michael
    Marja C.P. Timmermans
    First Published July 1, 2024

Table of Contents

Volume 34, Issue 7 | July 2024

Research

The Chinese longsnout catfish genome provides novel insights into the feeding preference and corresponding metabolic strategy of carnivores

The grasshopper genome reveals long-term gene content conservation of the X Chromosome and temporal variation in X Chromosome evolution

Methods

High-fidelity, large-scale targeted profiling of microsatellites

CodonBERT large language model for mRNA vaccines

A gene regulatory network–aware graph learning method for cell identity annotation in single-cell RNA-seq data

Reference-informed prediction of alternative splicing and splicing-altering mutations from sequences

Delineating yeast cleavage and polyadenylation signals using deep learning

Pangenome-spanning epistasis and coselection analysis via de Bruijn graphs

Resources

Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes

Streamlined spatial and environmental expression signatures characterize the minimalist duckweed Wolffia australiana

Table of Contents

Volume 34, Issue 7 | July 2024

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Research

Methods

Resources