Volume 32, Issue 9 | September 2022

Research
- - Single-cell multi-omics of human preimplantation embryos shows susceptibility to glucocorticoids
    Cheng Zhao
    Savana Biondic
    Katherine Vandal
    Åsa K. Björklund
    Michael Hagemann-Jensen
    Theresa Maria Sommer Jesica Canizo Stephen Clark Pascal Raymond
    ...[+4 authors]...,
    Daniel R. Zenklusen
    Nicolas Rivron
    Wolf Reik
    Sophie Petropoulos
    First Published August 10, 2022
  - Identification of a transcriptional signature found in multiple models of ASD and related disorders
    Samuel Thudium
    Katherine Palozola
    Éloïse L'Her
    Erica Korb
    First Published September 14, 2022
  - Widespread association of the Argonaute protein AGO2 with meiotic chromatin suggests a distinct nuclear function in mammalian male reproduction
    Kimberly N. Griffin
    Benjamin William Walters
    Haixin Li
    Huafeng Wang
    Giulia Biancon
    Toma Tebaldi Carolyn B. Kaya Jean Kanyo TuKiet T. Lam
    ...[+4 authors]...,
    Andy L. Cox
    Stephanie Halene
    Jean-Ju Chung
    Bluma J. Lesch
    First Published September 15, 2022
  - Genomic analyses of wild argali, domestic sheep, and their hybrids provide insights into chromosome evolution, phenotypic variation, and germplasm innovation
    Xin Li
    San-Gang He
    Wen-Rong Li
    Ling-Yun Luo
    Ze Yan
    Dong-Xin Mo Xing Wan Feng-Hua Lv Ji Yang Ya-Xi Xu Juan Deng Qiang-Hui Zhu Xing-Long Xie Song-Song Xu Chen-Xi Liu Xin-Rong Peng Bin Han Zhong-Hui Li Lei Chen Jian-Lin Han Xue-Zhi Ding Renqing Dingkao Yue-Feng Chu Jin-Yan Wu
    ...[+19 authors]...,
    Li-Min Wang
    Ping Zhou
    Ming-Jun Liu
    Meng-Hua Li
    First Published August 10, 2022
  - An atlas of fish genome evolution reveals delayed rediploidization following the teleost whole-genome duplication
    Elise Parey
    Alexandra Louis
    Jérôme Montfort
    Yann Guiguen
    Hugues Roest Crollius
    First Published August 12, 2022
  - Chromosome-scale assemblies of Acanthamoeba castellanii genomes provide insights into Legionella pneumophila infection–related chromatin reorganization
    Cyril Matthey-Doret
    Morgan J. Colp
    Pedro Escoll
    Agnès Thierry
    Pierrick Moreau
    Bruce Curtis Tobias Sahr Matt Sarrasin Michael W. Gray
    ...[+4 authors]...,
    B. Franz Lang
    John M. Archibald
    Carmen Buchrieser
    Romain Koszul
    First Published September 15, 2022
  - Listeria monocytogenes genes supporting growth under standard laboratory cultivation conditions and during macrophage infection
    Martin A. Fischer
    Tim Engelgeh
    Patricia Rothe
    Stephan Fuchs
    Andrea Thürmer
    First Published September 16, 2022
Methods
- - Deep sequencing of short capped RNAs reveals novel families of noncoding RNAs
    Michiel de Hoon
    Alessandro Bonetti
    Charles Plessy
    Yoshinari Ando
    Chung-Chau Hon
    Yuri Ishizu Masayoshi Itoh Sachi Kato Dongyan Lin Sho Maekawa Mitsuyoshi Murata Hiromi Nishiyori Jay W. Shin Jens Stolte Ana Maria Suzuki Michihira Tagami Hazuki Takahashi Supat Thongjuea
    ...[+13 authors]...,
    Alistair R.R. Forrest
    Yoshihide Hayashizaki
    Juha Kere
    Piero Carninci
    First Published August 12, 2022
  - Scalable and model-free detection of spatial patterns and colocalization
    Qi Liu
    Chih-Yuan Hsu
    Yu Shyr
    First Published September 9, 2022
RECOMB 2022 Special/Methods
- - Assembler artifacts include misassembly because of unsafe unitigs and underassembly because of bidirected graphs
    Amatur Rahman
    Paul Medvedev
    First Published July 27, 2022
  - Lossless indexing with counting de Bruijn graphs
    Mikhail Karasikov
    Harun Mustafa
    Gunnar Rätsch
    André Kahles
    First Published May 24, 2022
  - Unsupervised cell functional annotation for single-cell RNA-seq
    Dongshunyi Li
    Jun Ding
    Ziv Bar-Joseph
    First Published June 28, 2022
  - Learning probabilistic protein–DNA recognition codes from DNA-binding specificities using structural mappings
    Joshua L. Wetzel
    Kaiqian Zhang
    Mona Singh
    First Published September 19, 2022
  - Ultra-high-diversity factorizable libraries for efficient therapeutic discovery
    Zheng Dai
    Sachit D. Saksena
    Geraldine Horny
    Christine Banholzer
    Stefan Ewert
    First Published June 23, 2022

Table of Contents

Volume 32, Issue 9 | September 2022

Research

Single-cell multi-omics of human preimplantation embryos shows susceptibility to glucocorticoids

Identification of a transcriptional signature found in multiple models of ASD and related disorders

Widespread association of the Argonaute protein AGO2 with meiotic chromatin suggests a distinct nuclear function in mammalian male reproduction

Genomic analyses of wild argali, domestic sheep, and their hybrids provide insights into chromosome evolution, phenotypic variation, and germplasm innovation

An atlas of fish genome evolution reveals delayed rediploidization following the teleost whole-genome duplication

Chromosome-scale assemblies of Acanthamoeba castellanii genomes provide insights into Legionella pneumophila infection–related chromatin reorganization

Listeria monocytogenes genes supporting growth under standard laboratory cultivation conditions and during macrophage infection

Methods

Deep sequencing of short capped RNAs reveals novel families of noncoding RNAs

Scalable and model-free detection of spatial patterns and colocalization

RECOMB 2022 Special/Methods

Assembler artifacts include misassembly because of unsafe unitigs and underassembly because of bidirected graphs

Lossless indexing with counting de Bruijn graphs

Unsupervised cell functional annotation for single-cell RNA-seq

Learning probabilistic protein–DNA recognition codes from DNA-binding specificities using structural mappings

Ultra-high-diversity factorizable libraries for efficient therapeutic discovery

Table of Contents

Volume 32, Issue 9 | September 2022

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Research

Methods

RECOMB 2022 Special/Methods