Volume 32, Issue 8 | August 2022

Research
- - Thousands of human mutation clusters are explained by short-range template switching
    Ari Löytynoja
    First Published June 27, 2022
  - Transcriptome innovations in primates revealed by single-molecule long-read sequencing
    Luis Ferrández-Peral
    Xiaoyu Zhan
    Marina Alvarez-Estape
    Cristina Chiva
    Paula Esteller-Cucala
    Raquel García-Pérez Eva Julià Esther Lizano Òscar Fornas Eduard Sabidó
    ...[+5 authors]...,
    Qiye Li
    Tomàs Marquès-Bonet
    David Juan
    Guojie Zhang
    First Published July 15, 2022
  - High temporal resolution RNA-seq time course data reveals widespread synchronous activation between mammalian lncRNAs and neighboring protein-coding genes
    Walter Muskovic
    Eve Slavich
    Ben Maslen
    Dominik C. Kaczorowski
    Joseph Cursons
    First Published June 27, 2022
  - Ruminant-specific retrotransposons shape regulatory evolution of bovine immunity
    Conor J. Kelly
    Carol G. Chitko-McKown
    Edward B. Chuong
    First Published August 10, 2022
  - Coordination of zygotic genome activation entry and exit by H3K4me3 and H3K27me3 in porcine early embryos
    Guowei Bu
    Wei Zhu
    Xin Liu
    Jingjing Zhang
    Longtao Yu
    Kai Zhou Shangke Wang Zhekun Li Zhengang Fan Tingting Wang Taotao Hu Ruifeng Hu Zhiting Liu Tao Wang
    ...[+9 authors]...,
    Linhui Wu
    Xia Zhang
    Shuhong Zhao
    Yi-Liang Miao
    First Published July 22, 2022
  - ceRNA crosstalk mediated by ncRNAs is a novel regulatory mechanism in fish sex determination and differentiation
    Lili Tang
    Fei Huang
    Wuxin You
    Ansgar Poetsch
    Rafael Henrique Nóbrega
    Deborah Mary Power Tengfei Zhu Kaiqiang Liu Hong-Yan Wang Qian Wang
    ...[+5 authors]...,
    Xiwen Xu
    Bo Feng
    Manfred Schartl
    Changwei Shao
    First Published August 12, 2022
  - Genomic analysis of Rad26 and Rad1–Rad10 reveals differences in their dependence on Mediator and RNA polymerase II
    Diyavarshini Gopaul
    Cyril Denby Wilkes
    Arach Goldar
    Nathalie Giordanengo Aiach
    Marie-Bénédicte Barrault
    First Published June 23, 2022
Methods
- - ATAC-STARR-seq reveals transcription factor–bound activators and silencers within chromatin-accessible regions of the human genome
    Tyler J. Hansen
    Emily Hodges
    First Published July 20, 2022
  - Haplotype and population structure inference using neural networks in whole-genome sequencing data
    Jonas Meisner
    Anders Albrechtsen
    First Published July 6, 2022
  - An efficient method to identify, date, and describe admixture events using haplotype information
    Pongsakorn Wangkumhang
    Matthew Greenfield
    Garrett Hellenthal
    First Published July 6, 2022
  - Highly accurate quantification of allelic gene expression for population and disease genetics
    Anna Saukkonen
    Helena Kilpinen
    Alan Hodgkinson
    First Published July 6, 2022
Resources
- - Proactive functional classification of all possible missense single-nucleotide variants in KCNQ4
    Honglan Zheng
    Xinhao Yan
    Guanluan Li
    Hengwei Lin
    Siqi Deng
    Wenhui Zhuang Fuqiang Yao Yu Lu
    ...[+3 authors]...,
    Xin Xia
    Huijun Yuan
    Li Jin
    Zhiqiang Yan
    First Published June 27, 2022
  - Assembly of a pangenome for global cattle reveals missing sequences and novel structural variations, providing new insights into their diversity and evolutionary history
    Yang Zhou
    Lv Yang
    Xiaotao Han
    Jiazheng Han
    Yan Hu
    Fan Li Han Xia Lingwei Peng Clarissa Boschiero Benjamin D. Rosen Derek M. Bickhart Shujun Zhang Aizhen Guo
    ...[+8 authors]...,
    Curtis P. Van Tassell
    Timothy P.L. Smith
    Liguo Yang
    George E. Liu
    First Published August 17, 2022
  - Recent, full-length gene retrocopies are common in canids
    Kevin Batcher
    Scarlett Varney
    Daniel York
    Matthew Blacksmith
    Jeffrey M. Kidd
    First Published August 12, 2022
  - dbEmbryo multi-omics database for analyses of synergistic regulation in early mammalian embryo development
    Xin Huang
    Xiaohan Tang
    Xuemei Bai
    Honglei Li
    Huan Tao
    Junting Wang Yaru Li Yu Sun Yang Zheng Xiang Xu Longteng Wang Yang Ding Meisong Lu
    ...[+8 authors]...,
    Pingkun Zhou
    Xiaochen Bo
    Hao Li
    Hebing Chen
    First Published August 17, 2022
Corrigendum
- - Corrigendum: Human primitive brain displays negative mitochondrial-nuclear expression correlation of respiratory genes
    Gilad Barshad
    Amit Blumberg
    Tal Cohen
    Dan Mishmar
    First Published August 25, 2022

Table of Contents

Volume 32, Issue 8 | August 2022

Research

Thousands of human mutation clusters are explained by short-range template switching

Transcriptome innovations in primates revealed by single-molecule long-read sequencing

High temporal resolution RNA-seq time course data reveals widespread synchronous activation between mammalian lncRNAs and neighboring protein-coding genes

Ruminant-specific retrotransposons shape regulatory evolution of bovine immunity

Coordination of zygotic genome activation entry and exit by H3K4me3 and H3K27me3 in porcine early embryos

ceRNA crosstalk mediated by ncRNAs is a novel regulatory mechanism in fish sex determination and differentiation

Genomic analysis of Rad26 and Rad1–Rad10 reveals differences in their dependence on Mediator and RNA polymerase II

Methods

ATAC-STARR-seq reveals transcription factor–bound activators and silencers within chromatin-accessible regions of the human genome

Haplotype and population structure inference using neural networks in whole-genome sequencing data

An efficient method to identify, date, and describe admixture events using haplotype information

Highly accurate quantification of allelic gene expression for population and disease genetics

Resources

Proactive functional classification of all possible missense single-nucleotide variants in KCNQ4

Assembly of a pangenome for global cattle reveals missing sequences and novel structural variations, providing new insights into their diversity and evolutionary history

Recent, full-length gene retrocopies are common in canids

dbEmbryo multi-omics database for analyses of synergistic regulation in early mammalian embryo development

Corrigendum

Corrigendum: Human primitive brain displays negative mitochondrial-nuclear expression correlation of respiratory genes

Table of Contents

Volume 32, Issue 8 | August 2022

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Research

Methods

Resources

Corrigendum