Volume 28, Issue 9 | September 2018

Perspective
- - Realizing the potential of blockchain technologies in genomics
    Halil Ibrahim Ozercan
    Atalay Mert Ileri
    Erman Ayday
    Can Alkan
    First Published August 3, 2018
Research
- - Noncanonical secondary structures arising from non-B DNA motifs are determinants of mutagenesis
    Ilias Georgakopoulos-Soares
    Sandro Morganella
    Naman Jain
    Martin Hemberg
    Serena Nik-Zainal
    First Published August 13, 2018
  - Glucocorticoid receptor recruits to enhancers and drives activation by motif-directed binding
    Ian C. McDowell
    Alejandro Barrera
    Anthony M. D'Ippolito
    Christopher M. Vockley
    Linda K. Hong
    Sarah M. Leichter Luke C. Bartelt William H. Majoros Lingyun Song Alexias Safi D. Dewran Koçak Charles A. Gersbach
    ...[+7 authors]...,
    Alexander J. Hartemink
    Gregory E. Crawford
    Barbara E. Engelhardt
    Timothy E. Reddy
    First Published August 10, 2018
  - Tracing human stem cell lineage during development using DNA methylation
    Lucas A. Salas
    John K. Wiencke
    Devin C. Koestler
    Ze Zhang
    Brock C. Christensen
    First Published August 2, 2018
  - Natural genetic variation in C. elegans identified genomic loci controlling metabolite levels
    Arwen W. Gao
    Mark G. Sterken
    Jelmi uit de Bos
    Jelle van Creij
    Rashmi Kamble
    First Published August 14, 2018
  - Death of new microRNA genes in Drosophila via gradual loss of fitness advantages
    Guang-An Lu
    Yixin Zhao
    Hao Yang
    Ao Lan
    Suhua Shi
    Zhongqi Liufu Yumei Huang
    ...[+2 authors]...,
    Tian Tang
    Jin Xu
    Xu Shen
    Chung-I Wu
    First Published July 26, 2018
  - Hidden variation in polyploid wheat drives local adaptation
    Laura-Jayne Gardiner
    Ryan Joynson
    Jimmy Omony
    Rachel Rusholme-Pilcher
    Lisa Olohan
    Daniel Lang Caihong Bai Malcolm Hawkesford David Salt Manuel Spannagl Klaus F.X. Mayer
    ...[+6 authors]...,
    John Kenny
    Michael Bevan
    Neil Hall
    Anthony Hall
    First Published August 9, 2018
  - Plant 24-nt reproductive phasiRNAs from intramolecular duplex mRNAs in diverse monocots
    Atul Kakrana
    Sandra M. Mathioni
    Kun Huang
    Reza Hammond
    Lee Vandivier
    Parth Patel Siwaret Arikit Olga Shevchenko Alex E. Harkess
    ...[+4 authors]...,
    Bruce Kingham
    Brian D. Gregory
    James H. Leebens-Mack
    Blake C. Meyers
    First Published July 12, 2018
Methods
- - High-throughput single-cell DNA sequencing of acute myeloid leukemia tumors with droplet microfluidics
    Maurizio Pellegrino
    Adam Sciambi
    Sebastian Treusch
    Robert Durruthy-Durruthy
    Kaustubh Gokhale
    Jose Jacob Tina X. Chen Jennifer A. Geis William Oldham Jairo Matthews Hagop Kantarjian P. Andrew Futreal
    ...[+7 authors]...,
    Keyur Patel
    Keith W. Jones
    Koichi Takahashi
    Dennis J. Eastburn
    First Published August 7, 2018
  - Single-cell RNA-seq analysis identifies markers of resistance to targeted BRAF inhibitors in melanoma cell populations
    Yu-Jui Ho
    Naishitha Anaparthy
    David Molik
    Grinu Mathew
    Toby Aicher
    First Published July 30, 2018
  - Whole-genome bisulfite sequencing with improved accuracy and cost
    Masako Suzuki
    Will Liao
    Frank Wos
    Andrew D. Johnston
    Justin DeGrazia
    Jennifer Ishii
    ...[+1 authors]...,
    Toby Bloom
    Michael C. Zody
    Soren Germer
    John M. Greally
    First Published August 9, 2018
  - Genome-scale identification of cellular pathways required for cell surface recognition
    Sumana Sharma
    S. Josefin Bartholdson
    Amalie C.M. Couch
    Kosuke Yusa
    Gavin J. Wright
    First Published June 18, 2018
  - Variant antigen repertoires in Trypanosoma congolense populations and experimental infections can be profiled from deep sequence data using universal protein motifs
    Sara Silva Pereira
    Aitor Casas-Sánchez
    Lee R. Haines
    Moses Ogugo
    Kihara Absolomon
    Mandy Sanders Steve Kemp
    ...[+2 authors]...,
    Álvaro Acosta-Serrano
    Harry Noyes
    Matthew Berriman
    Andrew P. Jackson
    First Published July 13, 2018
  - GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens
    Zhemin Zhou
    Nabil-Fareed Alikhan
    Martin J. Sergeant
    Nina Luhmann
    Cátia Vaz
    First Published July 26, 2018
Resources
- - Human proteins that interact with RNA/DNA hybrids
    Isabel X. Wang
    Christopher Grunseich
    Jennifer Fox
    Joshua Burdick
    Zhengwei Zhu
    First Published August 14, 2018
  - High resolution annotation of zebrafish transcriptome using long-read sequencing
    German Nudelman
    Antonio Frasca
    Brandon Kent
    Kirsten C. Sadler
    Stuart C. Sealfon
    First Published July 30, 2018
Corrigendum
- - Corrigendum: Large-scale analysis of genome and transcriptome alterations in multiple tumors unveils novel cancer-relevant splicing networks
    Endre Sebestyén
    Babita Singh
    Belén Miñana
    Amadís Pagès
    Francesca Mateo
    First Published September 4, 2018

Table of Contents

Volume 28, Issue 9 | September 2018

Perspective

Realizing the potential of blockchain technologies in genomics

Research

Noncanonical secondary structures arising from non-B DNA motifs are determinants of mutagenesis

Glucocorticoid receptor recruits to enhancers and drives activation by motif-directed binding

Tracing human stem cell lineage during development using DNA methylation

Natural genetic variation in C. elegans identified genomic loci controlling metabolite levels

Death of new microRNA genes in Drosophila via gradual loss of fitness advantages

Hidden variation in polyploid wheat drives local adaptation

Plant 24-nt reproductive phasiRNAs from intramolecular duplex mRNAs in diverse monocots

Methods

High-throughput single-cell DNA sequencing of acute myeloid leukemia tumors with droplet microfluidics

Single-cell RNA-seq analysis identifies markers of resistance to targeted BRAF inhibitors in melanoma cell populations

Whole-genome bisulfite sequencing with improved accuracy and cost

Genome-scale identification of cellular pathways required for cell surface recognition

Variant antigen repertoires in Trypanosoma congolense populations and experimental infections can be profiled from deep sequence data using universal protein motifs

GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens

Resources

Human proteins that interact with RNA/DNA hybrids

High resolution annotation of zebrafish transcriptome using long-read sequencing

Corrigendum

Corrigendum: Large-scale analysis of genome and transcriptome alterations in multiple tumors unveils novel cancer-relevant splicing networks

Table of Contents

Volume 28, Issue 9 | September 2018

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Perspective

Research

Methods

Resources

Corrigendum