Volume 28, Issue 10 | October 2018

Research
- - A compendium of conserved cleavage and polyadenylation events in mammalian genes
    Ruijia Wang
    Dinghai Zheng
    Ghassan Yehia
    Bin Tian
    First Published August 24, 2018
  - Exonic splice regulation imposes strong selection at synonymous sites
    Rosina Savisaar
    Laurence D. Hurst
    First Published August 24, 2018
  - Study of mitotic chromatin supports a model of bookmarking by histone modifications and reveals nucleosome deposition patterns
    Elisheva Javasky
    Inbal Shamir
    Shashi Gandhi
    Shawn Egri
    Oded Sandler
    Scott B. Rothbart
    ...[+1 authors]...,
    Noam Kaplan
    Jacob D. Jaffe
    Alon Goren
    Itamar Simon
    First Published August 30, 2018
  - Metagenomic analysis with strain-level resolution reveals fine-scale variation in the human pregnancy microbiome
    Daniela S. Aliaga Goltsman
    Christine L. Sun
    Diana M. Proctor
    Daniel B. DiGiulio
    Anna Robaczewska
    Brian C. Thomas Gary M. Shaw
    ...[+2 authors]...,
    David K. Stevenson
    Susan P. Holmes
    Jillian F. Banfield
    David A. Relman
    First Published September 19, 2018
  - Single-cell RNA-sequencing reveals the existence of naive and primed pluripotency in pre-implantation rhesus monkey embryos
    Denghui Liu
    Xinyi Wang
    Dajian He
    Chunli Sun
    Xiechao He
    First Published August 28, 2018
  - Polycomb repressive complex 1 shapes the nucleosome landscape but not accessibility at target genes
    Hamish W. King
    Nadezda A. Fursova
    Neil P. Blackledge
    Robert J. Klose
    First Published August 28, 2018
  - Pioneering, chromatin remodeling, and epigenetic constraint in early T-cell gene regulation by SPI1 (PU.1)
    Jonas Ungerbäck
    Hiroyuki Hosokawa
    Xun Wang
    Tobias Strid
    Brian A. Williams
    First Published August 31, 2018
  - A massively parallel reporter assay reveals context-dependent activity of homeodomain binding sites in vivo
    Andrew E.O. Hughes
    Connie A. Myers
    Joseph C. Corbo
    First Published August 29, 2018
  - Phenotypically distinct female castes in honey bees are defined by alternative chromatin states during larval development
    Marek Wojciechowski
    Robert Lowe
    Joanna Maleszka
    Danyal Conn
    Ryszard Maleszka
    First Published August 22, 2018
  - Epigenetic analyses of planarian stem cells demonstrate conservation of bivalent histone modifications in animal stem cells
    Anish Dattani
    Damian Kao
    Yuliana Mihaylova
    Prasad Abnave
    Samantha Hughes
    First Published August 24, 2018
  - Coregulation of ribosomal RNA with hundreds of genes contributes to phenotypic variation
    Bo Li
    Karl A.G. Kremling
    Penghao Wu
    Robert Bukowski
    Maria C. Romay
    First Published August 30, 2018
Methods
- - Transcriptional fates of human-specific segmental duplications in brain
    Max L. Dougherty
    Jason G. Underwood
    Bradley J. Nelson
    Elizabeth Tseng
    Katherine M. Munson
    First Published September 18, 2018
  - Human cardiac cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants
    Dongwon Lee
    Ashish Kapoor
    Alexias Safi
    Lingyun Song
    Marc K. Halushka
    First Published August 23, 2018
  - Targeted genome fragmentation with CRISPR/Cas9 enables fast and efficient enrichment of small genomic regions and ultra-accurate sequencing with low DNA input (CRISPR-DS)
    Daniela Nachmanson
    Shenyi Lian
    Elizabeth K. Schmidt
    Michael J. Hipp
    Kathryn T. Baker
    Yuezheng Zhang Maria Tretiakova Kaitlyn Loubet-Senear
    ...[+3 authors]...,
    Brendan F. Kohrn
    Jesse J. Salk
    Scott R. Kennedy
    Rosa Ana Risques
    First Published September 19, 2018

Table of Contents

Volume 28, Issue 10 | October 2018

Research

A compendium of conserved cleavage and polyadenylation events in mammalian genes

Exonic splice regulation imposes strong selection at synonymous sites

Study of mitotic chromatin supports a model of bookmarking by histone modifications and reveals nucleosome deposition patterns

Metagenomic analysis with strain-level resolution reveals fine-scale variation in the human pregnancy microbiome

Single-cell RNA-sequencing reveals the existence of naive and primed pluripotency in pre-implantation rhesus monkey embryos

Polycomb repressive complex 1 shapes the nucleosome landscape but not accessibility at target genes

Pioneering, chromatin remodeling, and epigenetic constraint in early T-cell gene regulation by SPI1 (PU.1)

A massively parallel reporter assay reveals context-dependent activity of homeodomain binding sites in vivo

Phenotypically distinct female castes in honey bees are defined by alternative chromatin states during larval development

Epigenetic analyses of planarian stem cells demonstrate conservation of bivalent histone modifications in animal stem cells

Coregulation of ribosomal RNA with hundreds of genes contributes to phenotypic variation

Methods

Transcriptional fates of human-specific segmental duplications in brain

Human cardiac cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants

Targeted genome fragmentation with CRISPR/Cas9 enables fast and efficient enrichment of small genomic regions and ultra-accurate sequencing with low DNA input (CRISPR-DS)

Table of Contents

Volume 28, Issue 10 | October 2018

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Research

Methods