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Table of Contents
November 2018; 28 (11)
Research
Select this article
Transcriptome evidence reveals enhanced autophagy-lysosomal function in centenarians
Fu-Hui Xiao
,
Xiao-Qiong Chen
,
Qin Yu
,
Yunshuang Ye
,
Yao-Wen Liu
,
Dongjing Yan
,
Li-Qin Yang
,
Guijun Chen
,
Rong Lin
,
Liping Yang
,
Xiaoping Liao
,
Wen Zhang
,
Wei Zhang
,
Nelson Leung-Sang Tang
,
Xiao-Fan Wang
,
Jumin Zhou
,
Wang-Wei Cai
,
Yong-Han He
,
and
Qing-Peng Kong
Genome Res.
November 2018
28
:
1601
-
1610
;
Published in Advance
October 23, 2018
,
doi:
10.1101/gr.220780.117
Abstract
Full Text
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Supplemental Material
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Aberrant
PRDM9
expression impacts the pan-cancer genomic landscape
Armande Ang Houle
,
Heather Gibling
,
Fabien C. Lamaze
,
Hilary A. Edgington
,
David Soave
,
Marie-Julie Fave
,
Mawusse Agbessi
,
Vanessa Bruat
,
Lincoln D. Stein
,
and
Philip Awadalla
Genome Res.
November 2018
28
:
1611
-
1620
;
Published in Advance
October 19, 2018
,
doi:
10.1101/gr.231696.117
Abstract
Full Text
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Cell-type–specific eQTL of primary melanocytes facilitates identification of melanoma susceptibility genes
Tongwu Zhang
,
Jiyeon Choi
,
Michael A. Kovacs
,
Jianxin Shi
,
Mai Xu
,
NISC Comparative Sequencing Program
,
Melanoma Meta-Analysis Consortium
,
Alisa M. Goldstein
,
Adam J. Trower
,
D. Timothy Bishop
,
Mark M. Iles
,
David L. Duffy
,
Stuart MacGregor
,
Laufey T. Amundadottir
,
Matthew H. Law
,
Stacie K. Loftus
,
William J. Pavan
,
and
Kevin M. Brown
Genome Res.
November 2018
28
:
1621
-
1635
;
Published in Advance
October 17, 2018
,
doi:
10.1101/gr.233304.117
Abstract
Full Text
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Gene regulation underlies environmental adaptation in house mice
Katya L. Mack
,
Mallory A. Ballinger
,
Megan Phifer-Rixey
,
and
Michael W. Nachman
Genome Res.
November 2018
28
:
1636
-
1645
;
Published in Advance
September 7, 2018
,
doi:
10.1101/gr.238998.118
Abstract
Full Text
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The gene repressor complex NuRD interacts with the histone variant H3.3 at promoters of active genes
Daniel C. Kraushaar
,
Zuozhou Chen
,
Qingsong Tang
,
Kairong Cui
,
Junfang Zhang
,
and
Keji Zhao
Genome Res.
November 2018
28
:
1646
-
1655
;
Published in Advance
September 25, 2018
,
doi:
10.1101/gr.236224.118
Abstract
Full Text
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Crosstalk between alternative polyadenylation and miRNAs in the regulation of protein translational efficiency
Yonggui Fu
,
Liutao Chen
,
Chengyong Chen
,
Yutong Ge
,
Mingjing Kang
,
Zili Song
,
Jingwen Li
,
Yuchao Feng
,
Zhanfeng Huo
,
Guopei He
,
Mengmeng Hou
,
Shangwu Chen
,
and
Anlong Xu
Genome Res.
November 2018
28
:
1656
-
1663
;
Published in Advance
September 18, 2018
,
doi:
10.1101/gr.231506.117
Abstract
Full Text
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Deep taxon sampling reveals the evolutionary dynamics of novel gene families in
Pristionchus
nematodes
Neel Prabh
,
Waltraud Roeseler
,
Hanh Witte
,
Gabi Eberhardt
,
Ralf J. Sommer
,
and
Christian Rödelsperger
Genome Res.
November 2018
28
:
1664
-
1674
;
Published in Advance
September 19, 2018
,
doi:
10.1101/gr.234971.118
Abstract
Full Text
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OPEN ACCESS ARTICLE
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Young genes have distinct gene structure, epigenetic profiles, and transcriptional regulation
Michael S. Werner
,
Bogdan Sieriebriennikov
,
Neel Prabh
,
Tobias Loschko
,
Christa Lanz
,
and
Ralf J. Sommer
Genome Res.
November 2018
28
:
1675
-
1687
;
Published in Advance
September 19, 2018
,
doi:
10.1101/gr.234872.118
Abstract
Full Text
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OPEN ACCESS ARTICLE
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Chromatin conformation and transcriptional activity are permissive regulators of DNA replication initiation in
Drosophila
Robin L. Armstrong
,
Taylor J.R. Penke
,
Brian D. Strahl
,
A. Gregory Matera
,
Daniel J. McKay
,
David M. MacAlpine
,
and
Robert J. Duronio
Genome Res.
November 2018
28
:
1688
-
1700
;
Published in Advance
October 2, 2018
,
doi:
10.1101/gr.239913.118
Abstract
Full Text
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Methods
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High-throughput characterization of genetic effects on DNA–protein binding and gene transcription
Cynthia A. Kalita
,
Christopher D. Brown
,
Andrew Freiman
,
Jenna Isherwood
,
Xiaoquan Wen
,
Roger Pique-Regi
,
and
Francesca Luca
Genome Res.
November 2018
28
:
1701
-
1708
;
Published in Advance
September 25, 2018
,
doi:
10.1101/gr.237354.118
Abstract
Full Text
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Supplemental Material
OPEN ACCESS ARTICLE
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Targeted genotyping of variable number tandem repeats with adVNTR
Mehrdad Bakhtiari
,
Sharona Shleizer-Burko
,
Melissa Gymrek
,
Vikas Bansal
,
and
Vineet Bafna
Genome Res.
November 2018
28
:
1709
-
1719
;
Published in Advance
October 23, 2018
,
doi:
10.1101/gr.235119.118
Abstract
Full Text
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Chromosome assembly of large and complex genomes using multiple references
Mikhail Kolmogorov
,
Joel Armstrong
,
Brian J. Raney
,
Ian Streeter
,
Matthew Dunn
,
Fengtang Yang
,
Duncan Odom
,
Paul Flicek
,
Thomas M. Keane
,
David Thybert
,
Benedict Paten
,
and
Son Pham
Genome Res.
November 2018
28
:
1720
-
1732
;
Published in Advance
October 19, 2018
,
doi:
10.1101/gr.236273.118
Abstract
Full Text
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OPEN ACCESS ARTICLE
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High-salt–recovered sequences are associated with the active chromosomal compartment and with large ribonucleoprotein complexes including nuclear bodies
Marie-Odile Baudement
,
Axel Cournac
,
Franck Court
,
Marie Seveno
,
Hugues Parrinello
,
Christelle Reynes
,
Robert Sabatier
,
Tristan Bouschet
,
Zhou Yi
,
Sephora Sallis
,
Mathilde Tancelin
,
Cosette Rebouissou
,
Guy Cathala
,
Annick Lesne
,
Julien Mozziconacci
,
Laurent Journot
,
and
Thierry Forné
Genome Res.
November 2018
28
:
1733
-
1746
;
Published in Advance
October 4, 2018
,
doi:
10.1101/gr.237073.118
Abstract
Full Text
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Resources
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Maftools: efficient and comprehensive analysis of somatic variants in cancer
Anand Mayakonda
,
De-Chen Lin
,
Yassen Assenov
,
Christoph Plass
,
and
H. Phillip Koeffler
Genome Res.
November 2018
28
:
1747
-
1756
;
Published in Advance
October 19, 2018
,
doi:
10.1101/gr.239244.118
Abstract
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The genomic architecture and molecular evolution of ant odorant receptors
Sean K. McKenzie
and
Daniel J.C. Kronauer
Genome Res.
November 2018
28
:
1757
-
1765
;
Published in Advance
September 24, 2018
,
doi:
10.1101/gr.237123.118
Abstract
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Corrigendum
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Corrigendum: Tempo and mode of regulatory evolution in
Drosophila
Joseph D. Coolon
,
C. Joel McManus
,
Kraig R. Stevenson
,
Brenton R. Graveley
,
and
Patricia J. Wittkopp
Genome Res.
November 2018
28
:
1766
;
doi:
10.1101/gr.244087.118
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November 2018;
28
(11)
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