Volume 28, Issue 11 | November 2018

Research
- - Transcriptome evidence reveals enhanced autophagy-lysosomal function in centenarians
    Fu-Hui Xiao
    Xiao-Qiong Chen
    Qin Yu
    Yunshuang Ye
    Yao-Wen Liu
    Dongjing Yan Li-Qin Yang Guijun Chen Rong Lin Liping Yang Xiaoping Liao Wen Zhang Wei Zhang Nelson Leung-Sang Tang Xiao-Fan Wang
    ...[+10 authors]...,
    Jumin Zhou
    Wang-Wei Cai
    Yong-Han He
    Qing-Peng Kong
    First Published October 23, 2018
  - Aberrant PRDM9 expression impacts the pan-cancer genomic landscape
    Armande Ang Houle
    Heather Gibling
    Fabien C. Lamaze
    Hilary A. Edgington
    David Soave
    Marie-Julie Fave
    ...[+1 authors]...,
    Mawusse Agbessi
    Vanessa Bruat
    Lincoln D. Stein
    Philip Awadalla
    First Published October 19, 2018
  - Cell-type–specific eQTL of primary melanocytes facilitates identification of melanoma susceptibility genes
    Tongwu Zhang
    Jiyeon Choi
    Michael A. Kovacs
    Jianxin Shi
    Mai Xu
    Alisa M. Goldstein Adam J. Trower D. Timothy Bishop Mark M. Iles David L. Duffy Stuart MacGregor Laufey T. Amundadottir Matthew H. Law Stacie K. Loftus William J. Pavan Kevin M. Brown Matthew H. Law D. Timothy Bishop Jeffrey E. Lee Myriam Brossard Nicholas G. Martin Eric K. Moses Fengju Song Jennifer H. Barrett Rajiv Kumar Douglas F. Easton Paul D.P. Pharoah Anthony J. Swerdlow Katerina P. Kypreou John C. Taylor Mark Harland Juliette Randerson-Moor Lars A. Akslen Per A. Andresen Marie-Françoise Avril Esther Azizi Giovanna Bianchi Scarrà Kevin M. Brown Tadeusz Dȩbniak David L. Duffy David E. Elder Shenying Fang Eitan Friedman Pilar Galan Paola Ghiorzo Elizabeth M. Gillanders Alisa M. Goldstein Nelleke A. Gruis Johan Hansson Per Helsing Marko Hočevar Veronica Höiom Christian Ingvar Peter A. Kanetsky Wei V. Chen Maria Teresa Landi Julie Lang G. Mark Lathrop Jan Lubiński Rona M. Mackie Graham J. Mann Anders Molven Grant W. Montgomery Srdjan Novaković Håkan Olsson Susana Puig Joan Anton Puig-Butille Wenting Wu Abrar A. Qureshi Graham L. Radford-Smith Nienke van der Stoep Remco van Doorn David C. Whiteman Jamie E. Craig Dirk Schadendorf Lisa A. Simms Kathryn P. Burdon Dale R. Nyholt Karen A. Pooley Nick Orr Alexander J. Stratigos Anne E. Cust Sarah V. Ward Nicholas K. Hayward Jiali Han Hans-Joachim Schulze Alison M. Dunning Julia A. Newton Bishop Florence Demenais Christopher I. Amos Stuart MacGregor Mark M. Iles Beatrice B. Barnabas Gerard G. Bouffard Shelis Y. Brooks Holly Coleman Lyudmila Dekhtyar Xiaobin Guan Joel Han Shi-ling Ho Richelle Legaspi Quino L. Maduro Catherine A. Masiello Jennifer C. McDowell Casandra Montemayor James C. Mullikin Morgan Park Nancy L. Riebow Karen Schandler Brian Schmidt Christina Sison Raymond Smith Sirintorn Stantripop
    ...[+108 authors]...,
    James W. Thomas
    Pamela J. Thomas
    Meghana Vemulapalli
    Alice C. Young
    First Published October 17, 2018
  - Gene regulation underlies environmental adaptation in house mice
    Katya L. Mack
    Mallory A. Ballinger
    Megan Phifer-Rixey
    Michael W. Nachman
    First Published September 7, 2018
  - The gene repressor complex NuRD interacts with the histone variant H3.3 at promoters of active genes
    Daniel C. Kraushaar
    Zuozhou Chen
    Qingsong Tang
    Kairong Cui
    Junfang Zhang
    First Published September 25, 2018
  - Crosstalk between alternative polyadenylation and miRNAs in the regulation of protein translational efficiency
    Yonggui Fu
    Liutao Chen
    Chengyong Chen
    Yutong Ge
    Mingjing Kang
    Zili Song Jingwen Li Yuchao Feng Zhanfeng Huo
    ...[+4 authors]...,
    Guopei He
    Mengmeng Hou
    Shangwu Chen
    Anlong Xu
    First Published September 18, 2018
  - Deep taxon sampling reveals the evolutionary dynamics of novel gene families in Pristionchus nematodes
    Neel Prabh
    Waltraud Roeseler
    Hanh Witte
    Gabi Eberhardt
    Ralf J. Sommer
    First Published September 19, 2018
  - Young genes have distinct gene structure, epigenetic profiles, and transcriptional regulation
    Michael S. Werner
    Bogdan Sieriebriennikov
    Neel Prabh
    Tobias Loschko
    Christa Lanz
    First Published September 19, 2018
  - Chromatin conformation and transcriptional activity are permissive regulators of DNA replication initiation in Drosophila
    Robin L. Armstrong
    Taylor J.R. Penke
    Brian D. Strahl
    A. Gregory Matera
    Daniel J. McKay
    First Published October 2, 2018
Methods
- - High-throughput characterization of genetic effects on DNA–protein binding and gene transcription
    Cynthia A. Kalita
    Christopher D. Brown
    Andrew Freiman
    Jenna Isherwood
    Xiaoquan Wen
    First Published September 25, 2018
  - Targeted genotyping of variable number tandem repeats with adVNTR
    Mehrdad Bakhtiari
    Sharona Shleizer-Burko
    Melissa Gymrek
    Vikas Bansal
    Vineet Bafna
    First Published October 23, 2018
  - Chromosome assembly of large and complex genomes using multiple references
    Mikhail Kolmogorov
    Joel Armstrong
    Brian J. Raney
    Ian Streeter
    Matthew Dunn
    Fengtang Yang Duncan Odom Paul Flicek
    ...[+3 authors]...,
    Thomas M. Keane
    David Thybert
    Benedict Paten
    Son Pham
    First Published October 19, 2018
  - High-salt–recovered sequences are associated with the active chromosomal compartment and with large ribonucleoprotein complexes including nuclear bodies
    Marie-Odile Baudement
    Axel Cournac
    Franck Court
    Marie Seveno
    Hugues Parrinello
    Christelle Reynes Robert Sabatier Tristan Bouschet Zhou Yi Sephora Sallis Mathilde Tancelin Cosette Rebouissou Guy Cathala
    ...[+8 authors]...,
    Annick Lesne
    Julien Mozziconacci
    Laurent Journot
    Thierry Forné
    First Published October 4, 2018
Resources
- - Maftools: efficient and comprehensive analysis of somatic variants in cancer
    Anand Mayakonda
    De-Chen Lin
    Yassen Assenov
    Christoph Plass
    H. Phillip Koeffler
    First Published October 19, 2018
  - The genomic architecture and molecular evolution of ant odorant receptors
    Sean K. McKenzie
    Daniel J.C. Kronauer
    First Published September 24, 2018
Corrigendum
- - Corrigendum: Tempo and mode of regulatory evolution in Drosophila
    Joseph D. Coolon
    C. Joel McManus
    Kraig R. Stevenson
    Brenton R. Graveley
    Patricia J. Wittkopp
    First Published November 1, 2018

Table of Contents

Volume 28, Issue 11 | November 2018

Research

Transcriptome evidence reveals enhanced autophagy-lysosomal function in centenarians

Aberrant PRDM9 expression impacts the pan-cancer genomic landscape

Cell-type–specific eQTL of primary melanocytes facilitates identification of melanoma susceptibility genes

Gene regulation underlies environmental adaptation in house mice

The gene repressor complex NuRD interacts with the histone variant H3.3 at promoters of active genes

Crosstalk between alternative polyadenylation and miRNAs in the regulation of protein translational efficiency

Deep taxon sampling reveals the evolutionary dynamics of novel gene families in Pristionchus nematodes

Young genes have distinct gene structure, epigenetic profiles, and transcriptional regulation

Chromatin conformation and transcriptional activity are permissive regulators of DNA replication initiation in Drosophila

Methods

High-throughput characterization of genetic effects on DNA–protein binding and gene transcription

Targeted genotyping of variable number tandem repeats with adVNTR

Chromosome assembly of large and complex genomes using multiple references

High-salt–recovered sequences are associated with the active chromosomal compartment and with large ribonucleoprotein complexes including nuclear bodies

Resources

Maftools: efficient and comprehensive analysis of somatic variants in cancer

The genomic architecture and molecular evolution of ant odorant receptors

Corrigendum

Corrigendum: Tempo and mode of regulatory evolution in Drosophila

Table of Contents

Volume 28, Issue 11 | November 2018

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Research

Methods

Resources

Corrigendum