Volume 28, Issue 12 | December 2018

Research
- - Long-read sequencing technology indicates genome-wide effects of non-B DNA on polymerization speed and error rate
    Wilfried M. Guiblet
    Marzia A. Cremona
    Monika Cechova
    Robert S. Harris
    Iva Kejnovská
    First Published November 6, 2018
  - Selfish mutations dysregulating RAS-MAPK signaling are pervasive in aged human testes
    Geoffrey J. Maher
    Hannah K. Ralph
    Zhihao Ding
    Nils Koelling
    Hana Mlcochova
    Eleni Giannoulatou Pawan Dhami Dirk S. Paul Stefan H. Stricker
    ...[+4 authors]...,
    Stephan Beck
    Gilean McVean
    Andrew O.M. Wilkie
    Anne Goriely
    First Published October 24, 2018
  - LTRs activated by Epstein-Barr virus–induced transformation of B cells alter the transcriptome
    Amy Leung
    Candi Trac
    Hiroyuki Kato
    Kevin R. Costello
    Zhaoxia Chen
    First Published October 31, 2018
  - Global transcriptional activity dynamics reveal functional enhancer RNAs
    Yoon Jung Kim
    Peng Xie
    Lian Cao
    Michael Q. Zhang
    Tae Hoon Kim
    First Published October 23, 2018
  - Genetic analysis of isoform usage in the human anti-viral response reveals influenza-specific regulation of ERAP2 transcripts under balancing selection
    Chun Jimmie Ye
    Jenny Chen
    Alexandra-Chloé Villani
    Rachel E. Gate
    Meena Subramaniam
    Tushar Bhangale Mark N. Lee Towfique Raj Raktima Raychowdhury Weibo Li Noga Rogel Sean Simmons Selina H. Imboywa Portia I. Chipendo Cristin McCabe Michelle H. Lee Irene Y. Frohlich Barbara E. Stranger
    ...[+13 authors]...,
    Philip L. De Jager
    Aviv Regev
    Tim Behrens
    Nir Hacohen
    First Published November 16, 2018
  - Ranking noncanonical 5′ splice site usage by genome-wide RNA-seq analysis and splicing reporter assays
    Steffen Erkelenz
    Stephan Theiss
    Wolfgang Kaisers
    Johannes Ptok
    Lara Walotka
    Lisa Müller
    ...[+1 authors]...,
    Frank Hillebrand
    Anna-Lena Brillen
    Michael Sladek
    Heiner Schaal
    First Published October 24, 2018
  - Evolutionary conservation of Y Chromosome ampliconic gene families despite extensive structural variation
    Wesley A. Brashear
    Terje Raudsepp
    William J. Murphy
    First Published October 31, 2018
  - Damage-responsive elements in Drosophila regeneration
    Elena Vizcaya-Molina
    Cecilia C. Klein
    Florenci Serras
    Rakesh K. Mishra
    Roderic Guigó
    First Published November 20, 2018
  - Expanding heterochromatin reveals discrete subtelomeric domains delimited by chromatin landscape transitions
    Antoine Hocher
    Myriam Ruault
    Petra Kaferle
    Marc Descrimes
    Mickaël Garnier
    First Published October 24, 2018
  - Noncoding transcription influences the replication initiation program through chromatin regulation
    Julien Soudet
    Jatinder Kaur Gill
    Françoise Stutz
    First Published November 6, 2018
Methods
- - DIG-seq: a genome-wide CRISPR off-target profiling method using chromatin DNA
    Daesik Kim
    Jin-Soo Kim
    First Published November 9, 2018
  - Quantification of somatic mutation flow across individual cell division events by lineage sequencing
    Yehuda Brody
    Robert J. Kimmerling
    Yosef E. Maruvka
    David Benjamin
    Juniper J. Elacqua
    Nicholas J. Haradhvala Jaegil Kim Kent W. Mouw Kristjana Frangaj
    ...[+4 authors]...,
    Amnon Koren
    Gad Getz
    Scott R. Manalis
    Paul C. Blainey
    First Published November 20, 2018
  - HD-Marker: a highly multiplexed and flexible approach for targeted genotyping of more than 10,000 genes in a single-tube assay
    Jia Lv
    Wenqian Jiao
    Haobing Guo
    Pingping Liu
    Ruijia Wang
    Lingling Zhang
    ...[+1 authors]...,
    Qifan Zeng
    Xiaoli Hu
    Zhenmin Bao
    Shi Wang
    First Published November 8, 2018
  - NanoPARE: parallel analysis of RNA 5′ ends from low-input RNA
    Michael A. Schon
    Max J. Kellner
    Alexandra Plotnikova
    Falko Hofmann
    Michael D. Nodine
    First Published October 24, 2018
  - SLIC-CAGE: high-resolution transcription start site mapping using nanogram-levels of total RNA
    Nevena Cvetesic
    Harry G. Leitch
    Malgorzata Borkowska
    Ferenc Müller
    Piero Carninci
    First Published November 7, 2018
Reviewer Index
- - Reviewer Index, Volume 28, 2018
    First Published December 3, 2018

Table of Contents

Volume 28, Issue 12 | December 2018

Research

Long-read sequencing technology indicates genome-wide effects of non-B DNA on polymerization speed and error rate

Selfish mutations dysregulating RAS-MAPK signaling are pervasive in aged human testes

LTRs activated by Epstein-Barr virus–induced transformation of B cells alter the transcriptome

Global transcriptional activity dynamics reveal functional enhancer RNAs

Genetic analysis of isoform usage in the human anti-viral response reveals influenza-specific regulation of ERAP2 transcripts under balancing selection

Ranking noncanonical 5′ splice site usage by genome-wide RNA-seq analysis and splicing reporter assays

Evolutionary conservation of Y Chromosome ampliconic gene families despite extensive structural variation

Damage-responsive elements in Drosophila regeneration

Expanding heterochromatin reveals discrete subtelomeric domains delimited by chromatin landscape transitions

Noncoding transcription influences the replication initiation program through chromatin regulation

Methods

DIG-seq: a genome-wide CRISPR off-target profiling method using chromatin DNA

Quantification of somatic mutation flow across individual cell division events by lineage sequencing

HD-Marker: a highly multiplexed and flexible approach for targeted genotyping of more than 10,000 genes in a single-tube assay

NanoPARE: parallel analysis of RNA 5′ ends from low-input RNA

SLIC-CAGE: high-resolution transcription start site mapping using nanogram-levels of total RNA

Reviewer Index

Reviewer Index, Volume 28, 2018

Table of Contents

Volume 28, Issue 12 | December 2018

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Research

Methods

Reviewer Index