Volume 29, Issue 1 | January 2019

Research
- - Human papillomavirus and the landscape of secondary genetic alterations in oral cancers
    Maura L. Gillison
    Keiko Akagi
    Weihong Xiao
    Bo Jiang
    Robert K.L. Pickard
    Jingfeng Li Benjamin J. Swanson Amit D. Agrawal Mark Zucker Birgit Stache-Crain Anne-Katrin Emde
    ...[+6 authors]...,
    Heather M. Geiger
    Nicolas Robine
    Kevin R. Coombes
    David E. Symer
    First Published December 18, 2018
  - Rapid reversible changes in compartments and local chromatin organization revealed by hyperosmotic shock
    Ramon Amat
    René Böttcher
    François Le Dily
    Enrique Vidal
    Javier Quilez
    First Published December 6, 2018
  - Hormone-control regions mediate steroid receptor–dependent genome organization
    François Le Dily
    Enrique Vidal
    Yasmina Cuartero
    Javier Quilez
    A. Silvina Nacht
    Guillermo P. Vicent José Carbonell-Caballero Priyanka Sharma José Luis Villanueva-Cañas Roberto Ferrari
    ...[+5 authors]...,
    Lara Isabel De Llobet
    Gaetano Verde
    Roni H.G. Wright
    Miguel Beato
    First Published December 14, 2018
  - Widespread roles of enhancer-like transposable elements in cell identity and long-range genomic interactions
    Yaqiang Cao
    Guoyu Chen
    Gang Wu
    Xiaoli Zhang
    Joseph McDermott
    Xingwei Chen Chi Xu Quanlong Jiang Zhaoxiong Chen
    ...[+4 authors]...,
    Yingying Zeng
    Daosheng Ai
    Yi Huang
    Jing-Dong J. Han
    First Published November 19, 2018
  - A quantitative framework for characterizing the evolutionary history of mammalian gene expression
    Jenny Chen
    Ross Swofford
    Jeremy Johnson
    Beryl B. Cummings
    Noga Rogel
    First Published December 14, 2018
  - Accelerated rates of large-scale mutations in the presence of copper and nickel
    Frédéric J.J. Chain
    Jullien M. Flynn
    James K. Bull
    Melania E. Cristescu
    First Published November 28, 2018
  - Nucleosome remodeling at origins of global genome–nucleotide excision repair occurs at the boundaries of higher-order chromatin structure
    Patrick van Eijk
    Shuvro Prokash Nandi
    Shirong Yu
    Mark Bennett
    Matthew Leadbitter
    First Published December 14, 2018
  - Transposable element insertions in fission yeast drive adaptation to environmental stress
    Caroline Esnault
    Michael Lee
    Chloe Ham
    Henry L. Levin
    First Published December 12, 2018
  - Epigenetic mapping of the Arabidopsis metabolome reveals mediators of the epigenotype-phenotype map
    Rik Kooke
    Lionel Morgado
    Frank Becker
    Henriëtte van Eekelen
    Rashmi Hazarika
    First Published November 30, 2018
Methods
- - Defining TP53 pioneering capabilities with competitive nucleosome binding assays
    Xinyang Yu
    Michael J. Buck
    First Published November 8, 2018
  - Minerva: an alignment- and reference-free approach to deconvolve Linked-Reads for metagenomics
    David C. Danko
    Dmitry Meleshko
    Daniela Bezdan
    Christopher Mason
    Iman Hajirasouliha
    First Published December 6, 2018
Resources
- - Comparison and assessment of family- and population-based genotype imputation methods in large pedigrees
    Ehsan Ullah
    Raghvendra Mall
    Mostafa M. Abbas
    Khalid Kunji
    Alejandro Q. Nato
    First Published December 4, 2018
  - Global analysis of protein homomerization in Saccharomyces cerevisiae
    Yeonsoo Kim
    Jong Pil Jung
    Chan-Gi Pack
    Won-Ki Huh
    First Published December 19, 2018
  - A physical and genetic map of Cannabis sativa identifies extensive rearrangements at the THC/CBD acid synthase loci
    Kaitlin U. Laverty
    Jake M. Stout
    Mitchell J. Sullivan
    Hardik Shah
    Navdeep Gill
    Larry Holbrook Gintaras Deikus
    ...[+2 authors]...,
    Robert Sebra
    Timothy R. Hughes
    Jonathan E. Page
    Harm van Bakel
    First Published November 8, 2018
Corrigendum
- - Corrigendum: RNA-DNA hybrid (R-loop) immunoprecipitation mapping: an analytical workflow to evaluate inherent biases
    László Halász
    Zsolt Karányi
    Beáta Boros-Oláh
    Tímea Kuik-Rózsa
    Éva Sipos
    Éva Nagy Ágnes Mosolygó-L
    ...[+2 authors]...,
    Anett Mázló
    Éva Rajnavölgyi
    Gábor Halmos
    Lóránt Székvölgyi
    First Published January 2, 2019

Table of Contents

Volume 29, Issue 1 | January 2019

Research

Human papillomavirus and the landscape of secondary genetic alterations in oral cancers

Rapid reversible changes in compartments and local chromatin organization revealed by hyperosmotic shock

Hormone-control regions mediate steroid receptor–dependent genome organization

Widespread roles of enhancer-like transposable elements in cell identity and long-range genomic interactions

A quantitative framework for characterizing the evolutionary history of mammalian gene expression

Accelerated rates of large-scale mutations in the presence of copper and nickel

Nucleosome remodeling at origins of global genome–nucleotide excision repair occurs at the boundaries of higher-order chromatin structure

Transposable element insertions in fission yeast drive adaptation to environmental stress

Epigenetic mapping of the Arabidopsis metabolome reveals mediators of the epigenotype-phenotype map

Methods

Defining TP53 pioneering capabilities with competitive nucleosome binding assays

Minerva: an alignment- and reference-free approach to deconvolve Linked-Reads for metagenomics

Resources

Comparison and assessment of family- and population-based genotype imputation methods in large pedigrees

Global analysis of protein homomerization in Saccharomyces cerevisiae

A physical and genetic map of Cannabis sativa identifies extensive rearrangements at the THC/CBD acid synthase loci

Corrigendum

Corrigendum: RNA-DNA hybrid (R-loop) immunoprecipitation mapping: an analytical workflow to evaluate inherent biases

Table of Contents

Volume 29, Issue 1 | January 2019

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Research

Methods

Resources

Corrigendum