Volume 29, Issue 2 | February 2019

Research
- - Pathogenicity and selective constraint on variation near splice sites
    Jenny Lord
    Giuseppe Gallone
    Patrick J. Short
    Jeremy F. McRae
    Holly Ironfield
    Elizabeth H. Wynn Sebastian S. Gerety Liu He Bronwyn Kerr Diana S. Johnson Emma McCann Esther Kinning Frances Flinter I. Karen Temple Jill Clayton-Smith Meriel McEntagart Sally Ann Lynch Shelagh Joss Sofia Douzgou Tabib Dabir Virginia Clowes Vivienne P.M. McConnell Wayne Lam Caroline F. Wright
    ...[+19 authors]...,
    David R. FitzPatrick
    Helen V. Firth
    Jeffrey C. Barrett
    Matthew E. Hurles
    First Published December 26, 2018
  - Systematic interrogation of human promoters
    Shira Weingarten-Gabbay
    Ronit Nir
    Shai Lubliner
    Eilon Sharon
    Yael Kalma
    First Published January 8, 2019
  - MicroRNAs reinforce repression of PRC2 transcriptional targets independently and through a feed-forward regulatory network
    Haridha Shivram
    Steven V. Le
    Vishwanath R. Iyer
    First Published January 16, 2019
  - A dynamic and integrated epigenetic program at distal regions orchestrates transcriptional responses to VEGFA
    Shiyan Wang
    Jiahuan Chen
    Sara P. Garcia
    Xiaodong Liang
    Fang Zhang
    Pengyi Yan Huijing Yu Weiting Wei Zixuan Li Jingfang Wang Huangying Le Zeguang Han Xusheng Luo Daniel S. Day Sean M. Stevens Yan Zhang Peter J. Park Zhi-jie Liu
    ...[+13 authors]...,
    Kun Sun
    Guo-cheng Yuan
    William T. Pu
    Bing Zhang
    First Published January 22, 2019
  - Ancient exapted transposable elements promote nuclear enrichment of human long noncoding RNAs
    Joana Carlevaro-Fita
    Taisia Polidori
    Monalisa Das
    Carmen Navarro
    Tatjana I. Zoller
    First Published December 26, 2018
  - An AR-ERG transcriptional signature defined by long-range chromatin interactomes in prostate cancer cells
    Zhizhuo Zhang
    Kern Rei Chng
    Shreyas Lingadahalli
    Zikai Chen
    Mei Hui Liu
    Huy Hoang Do Shaojiang Cai Nicola Rinaldi Huay Mei Poh Guoliang Li Ying Ying Sung Charlie L. Heng Leighton J. Core Si Kee Tan Xiaoan Ruan John T. Lis
    ...[+11 authors]...,
    Manolis Kellis
    Yijun Ruan
    Wing-Kin Sung
    Edwin Cheung
    First Published January 3, 2019
  - CTCF sites display cell cycle–dependent dynamics in factor binding and nucleosome positioning
    Marlies E. Oomen
    Anders S. Hansen
    Yu Liu
    Xavier Darzacq
    Job Dekker
    First Published January 17, 2019
  - Transcription factor activity and nucleosome organization in mitosis
    Nicola Festuccia
    Nick Owens
    Thaleia Papadopoulou
    Inma Gonzalez
    Alexandra Tachtsidi
    Sandrine Vandoermel-Pournin Elena Gallego
    ...[+2 authors]...,
    Nancy Gutierrez
    Agnès Dubois
    Michel Cohen-Tannoudji
    Pablo Navarro
    First Published January 17, 2019
  - Gene duplication and genetic innovation in cereal genomes
    Hui Guo
    Yuannian Jiao
    Xu Tan
    Xiyin Wang
    Xianzhong Huang
    First Published January 16, 2019
Methods
- - Guide Positioning Sequencing identifies aberrant DNA methylation patterns that alter cell identity and tumor-immune surveillance networks
    Jin Li
    Yan Li
    Wei Li
    Huaibing Luo
    Yanping Xi
    Shihua Dong Ming Gao Peng Xu Baolong Zhang Ying Liang Qingping Zou Xin Hu Lina Peng Dan Zou Ting Wang Hongbo Yang
    ...[+11 authors]...,
    Cizhong Jiang
    Shaoliang Peng
    Feizhen Wu
    Wenqiang Yu
    First Published January 22, 2019
  - Anchor: trans-cell type prediction of transcription factor binding sites
    Hongyang Li
    Daniel Quang
    Yuanfang Guan
    First Published December 19, 2018
  - Identification of regulatory elements from nascent transcription using dREG
    Zhong Wang
    Tinyi Chu
    Lauren A. Choate
    Charles G. Danko
    First Published December 20, 2018
  - Fast and flexible bacterial genomic epidemiology with PopPUNK
    John A. Lees
    Simon R. Harris
    Gerry Tonkin-Hill
    Rebecca A. Gladstone
    Stephanie W. Lo
    First Published January 24, 2019
Resource
- - A chromosome-scale assembly of the axolotl genome
    Jeramiah J. Smith
    Nataliya Timoshevskaya
    Vladimir A. Timoshevskiy
    Melissa C. Keinath
    Drew Hardy
    First Published January 24, 2019

Table of Contents

Volume 29, Issue 2 | February 2019

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Research

Methods

Resource