Volume 28, Issue 8 | August 2018

Research
- - Human-specific features of spatial gene expression and regulation in eight brain regions
    Chuan Xu
    Qian Li
    Olga Efimova
    Liu He
    Shoji Tatsumoto
    Vita Stepanova Takao Oishi Toshifumi Udono Katsushi Yamaguchi Shuji Shigenobu
    ...[+5 authors]...,
    Akiyoshi Kakita
    Hiroyuki Nawa
    Philipp Khaitovich
    Yasuhiro Go
    First Published June 13, 2018
  - A comprehensive characterization of cis-acting splicing-associated variants in human cancer
    Yuichi Shiraishi
    Keisuke Kataoka
    Kenichi Chiba
    Ai Okada
    Yasunori Kogure
    First Published July 16, 2018
  - Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line
    Maria Nattestad
    Sara Goodwin
    Karen Ng
    Timour Baslan
    Fritz J. Sedlazeck
    Philipp Rescheneder Tyler Garvin Han Fang James Gurtowski Elizabeth Hutton Elizabeth Tseng Chen-Shan Chin Timothy Beck Yogi Sundaravadanam Melissa Kramer Eric Antoniou
    ...[+11 authors]...,
    John D. McPherson
    James Hicks
    W. Richard McCombie
    Michael C. Schatz
    First Published June 28, 2018
  - Immune signatures correlate with L1 retrotransposition in gastrointestinal cancers
    Hyunchul Jung
    Jung Kyoon Choi
    Eunjung Alice Lee
    First Published July 3, 2018
  - Switching roles for DNA and histone methylation depend on evolutionary ages of human endogenous retroviruses
    Hitoshi Ohtani
    Minmin Liu
    Wanding Zhou
    Gangning Liang
    Peter A. Jones
    First Published July 3, 2018
  - A common pattern of DNase I footprinting throughout the human mtDNA unveils clues for a chromatin-like organization
    Amit Blumberg
    Charles G. Danko
    Anshul Kundaje
    Dan Mishmar
    First Published July 12, 2018
  - Massive variation of short tandem repeats with functional consequences across strains of Arabidopsis thaliana
    Maximilian O. Press
    Rajiv C. McCoy
    Ashley N. Hall
    Joshua M. Akey
    Christine Queitsch
    First Published July 3, 2018
  - The organization of genome duplication is a critical determinant of the landscape of genome maintenance
    Blanca Gómez-Escoda
    Pei-Yun Jenny Wu
    First Published June 22, 2018
Methods
- - A modular dCas9-SunTag DNMT3A epigenome editing system overcomes pervasive off-target activity of direct fusion dCas9-DNMT3A constructs
    Christian Pflueger
    Dennis Tan
    Tessa Swain
    Trung Nguyen
    Jahnvi Pflueger
    First Published June 15, 2018
  - Principled multi-omic analysis reveals gene regulatory mechanisms of phenotype variation
    Casey Hanson
    Junmei Cairns
    Liewei Wang
    Saurabh Sinha
    First Published June 13, 2018
  - Linking transcriptional and genetic tumor heterogeneity through allele analysis of single-cell RNA-seq data
    Jean Fan
    Hae-Ock Lee
    Soohyun Lee
    Da-eun Ryu
    Semin Lee
    Catherine Xue Seok Jin Kim Kihyun Kim
    ...[+3 authors]...,
    Nikolaos Barkas
    Peter J. Park
    Woong-Yang Park
    Peter V. Kharchenko
    First Published June 13, 2018
  - Predicting human genes susceptible to genomic instability associated with Alu/Alu-mediated rearrangements
    Xiaofei Song
    Christine R. Beck
    Renqian Du
    Ian M. Campbell
    Zeynep Coban-Akdemir
    Shen Gu Amy M. Breman
    ...[+2 authors]...,
    Pawel Stankiewicz
    Grzegorz Ira
    Chad A. Shaw
    James R. Lupski
    First Published June 15, 2018
Resource
- - An atlas of chromatin accessibility in the adult human brain
    John F. Fullard
    Mads E. Hauberg
    Jaroslav Bendl
    Gabor Egervari
    Maria-Daniela Cirnaru
    Sarah M. Reach
    ...[+1 authors]...,
    Jan Motl
    Michelle E. Ehrlich
    Yasmin L. Hurd
    Panos Roussos
    First Published June 26, 2018
Corrigendum
- - Corrigendum: Interactive transcriptome analysis of malaria patients and infecting Plasmodium falciparum
    Junya Yamagishi
    Anna Natori
    Mohammed E.M. Tolba
    Arthur E. Mongan
    Chihiro Sugimoto
    Toshiaki Katayama Shuichi Kawashima Wojciech Makalowski
    ...[+3 authors]...,
    Ryuichiro Maeda
    Yuki Eshita
    Josef Tuda
    Yutaka Suzuki
    First Published August 1, 2018

Table of Contents

Volume 28, Issue 8 | August 2018

Research

Human-specific features of spatial gene expression and regulation in eight brain regions

A comprehensive characterization of cis-acting splicing-associated variants in human cancer

Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line

Immune signatures correlate with L1 retrotransposition in gastrointestinal cancers

Switching roles for DNA and histone methylation depend on evolutionary ages of human endogenous retroviruses

A common pattern of DNase I footprinting throughout the human mtDNA unveils clues for a chromatin-like organization

Massive variation of short tandem repeats with functional consequences across strains of Arabidopsis thaliana

The organization of genome duplication is a critical determinant of the landscape of genome maintenance

Methods

A modular dCas9-SunTag DNMT3A epigenome editing system overcomes pervasive off-target activity of direct fusion dCas9-DNMT3A constructs

Principled multi-omic analysis reveals gene regulatory mechanisms of phenotype variation

Linking transcriptional and genetic tumor heterogeneity through allele analysis of single-cell RNA-seq data

Predicting human genes susceptible to genomic instability associated with Alu/Alu-mediated rearrangements

Resource

An atlas of chromatin accessibility in the adult human brain

Corrigendum

Corrigendum: Interactive transcriptome analysis of malaria patients and infecting Plasmodium falciparum

Table of Contents

Volume 28, Issue 8 | August 2018

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Research

Methods

Resource

Corrigendum