Volume 28, Issue 7 | July 2018

Research
- - Long genes linked to autism spectrum disorders harbor broad enhancer-like chromatin domains
    Ying-Tao Zhao
    Deborah Y. Kwon
    Brian S. Johnson
    Maria Fasolino
    Janine M. Lamonica
    Yoon Jung Kim Boxuan Simen Zhao
    ...[+2 authors]...,
    Chuan He
    Golnaz Vahedi
    Tae Hoon Kim
    Zhaolan Zhou
    First Published May 30, 2018
  - A model for postzygotic mosaicisms quantifies the allele fraction drift, mutation rate, and contribution to de novo mutations
    Adam Yongxin Ye
    Yanmei Dou
    Xiaoxu Yang
    Sheng Wang
    August Yue Huang
    First Published June 6, 2018
  - Human primitive brain displays negative mitochondrial-nuclear expression correlation of respiratory genes
    Gilad Barshad
    Amit Blumberg
    Tal Cohen
    Dan Mishmar
    First Published June 14, 2018
  - Base-specific mutational intolerance near splice sites clarifies the role of nonessential splice nucleotides
    Sidi Zhang
    Kaitlin E. Samocha
    Manuel A. Rivas
    Konrad J. Karczewski
    Emma Daly
    First Published June 1, 2018
  - Human long intrinsically disordered protein regions are frequent targets of positive selection
    Arina Afanasyeva
    Mathias Bockwoldt
    Christopher R. Cooney
    Ines Heiland
    Toni I. Gossmann
    First Published June 1, 2018
  - Epigenetic maintenance of topological domains in the highly rearranged gibbon genome
    Nathan H. Lazar
    Kimberly A. Nevonen
    Brendan O'Connell
    Christine McCann
    Rachel J. O'Neill
    First Published June 18, 2018
  - Inherited DNA methylation primes the establishment of accessible chromatin during genome activation
    Guifen Liu
    Wen Wang
    Shengen Hu
    Xiangxiu Wang
    Yong Zhang
    First Published May 29, 2018
  - Long-read sequencing of nascent RNA reveals coupling among RNA processing events
    Lydia Herzel
    Korinna Straube
    Karla M. Neugebauer
    First Published June 14, 2018
  - Parent-of-origin-dependent nucleosome organization correlates with genomic imprinting in maize
    Xiaomei Dong
    Jian Chen
    Tong Li
    En Li
    Xiangbo Zhang
    First Published June 14, 2018
Methods
- - Comparative Annotation Toolkit (CAT)—simultaneous clade and personal genome annotation
    Ian T. Fiddes
    Joel Armstrong
    Mark Diekhans
    Stefanie Nachtweide
    Zev N. Kronenberg
    Jason G. Underwood David Gordon Dent Earl Thomas Keane
    ...[+4 authors]...,
    Evan E. Eichler
    David Haussler
    Mario Stanke
    Benedict Paten
    First Published June 8, 2018
  - Detecting, quantifying, and discriminating the mechanism of mosaic chromosomal aneuploidies using MAD-seq
    Yu Kong
    Esther R. Berko
    Anthony Marcketta
    Shahina B. Maqbool
    Claudia A. Simões-Pires
    David F. Kronn
    ...[+1 authors]...,
    Kenny Q. Ye
    Masako Suzuki
    Adam Auton
    John M. Greally
    First Published May 17, 2018
  - Single-cell RNA-seq of human induced pluripotent stem cells reveals cellular heterogeneity and cell state transitions between subpopulations
    Quan H. Nguyen
    Samuel W. Lukowski
    Han Sheng Chiu
    Anne Senabouth
    Timothy J.C. Bruxner
    First Published May 11, 2018
  - Mapping and characterizing N6-methyladenine in eukaryotic genomes using single-molecule real-time sequencing
    Shijia Zhu
    John Beaulaurier
    Gintaras Deikus
    Tao P. Wu
    Maya Strahl
    Ziyang Hao Guanzheng Luo James A. Gregory Andrew Chess Chuan He
    ...[+5 authors]...,
    Andrew Xiao
    Robert Sebra
    Eric E. Schadt
    Gang Fang
    First Published May 15, 2018
  - Modeling leaderless transcription and atypical genes results in more accurate gene prediction in prokaryotes
    Alexandre Lomsadze
    Karl Gemayel
    Shiyuyun Tang
    Mark Borodovsky
    First Published May 17, 2018
Resource
- - EPIGEN-Brazil Initiative resources: a Latin American imputation panel and the Scientific Workflow
    Wagner C.S. Magalhães
    Nathalia M. Araujo
    Thiago P. Leal
    Gilderlanio S. Araujo
    Paula J.S. Viriato
    Fernanda S. Kehdy Gustavo N. Costa Mauricio L. Barreto Bernardo L. Horta Maria Fernanda Lima-Costa Alexandre C. Pereira Eduardo Tarazona-Santos Maíra R. Rodrigues Isabela O. Alvim Victor Borda Mateus H. Gouveia Moara Machado Rennan G. Moreira Fernanda Rodrigues-Soares Hanaisa P. Sant Anna Meddly L. Santolalla
    ...[+16 authors]...,
    Marilia O. Scliar
    Giordano B. Soares-Souza
    Roxana Zamudio
    Camila Zolini
    First Published June 14, 2018
Corrigendum
- - Corrigendum: SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification
    Manuel Tardaguila
    Lorena de la Fuente
    Cristina Marti
    Cécile Pereira
    Francisco Jose Pardo-Palacios
    Hector del Risco Marc Ferrell Maravillas Mellado Marissa Macchietto Kenneth Verheggen Mariola Edelmann Iakes Ezkurdia Jesus Vazquez Michael Tress Ali Mortazavi
    ...[+10 authors]...,
    Lennart Martens
    Susana Rodriguez-Navarro
    Victoria Moreno-Manzano
    Ana Conesa
    First Published July 2, 2018

Table of Contents

Volume 28, Issue 7 | July 2018

Share this issue

Research

Methods

Resource

Corrigendum