Volume 26, Issue 4 | April 2016

Research
- - Transmission of human mtDNA heteroplasmy in the Genome of the Netherlands families: support for a variable-size bottleneck
    Mingkun Li
    Rebecca Rothwell
    Martijn Vermaat
    Manja Wachsmuth
    Roland Schröder
    Jeroen F.J. Laros Mannis van Oven Paul I.W. de Bakker Jasper A. Bovenberg Cornelia M. van Duijn Gert-Jan B. van Ommen P. Eline Slagboom Morris A. Swertz Cisca Wijmenga Manfred Kayser Dorret I. Boomsma Sebastian Zöllner Peter de Knijff Mark Stoneking Manfred Kayser
    ...[+15 authors]...,
    Dorret I. Boomsma
    Sebastian Zöllner
    Peter de Knijff
    Mark Stoneking
    First Published February 25, 2016
  - Great ape Y Chromosome and mitochondrial DNA phylogenies reflect subspecies structure and patterns of mating and dispersal
    Pille Hallast
    Pierpaolo Maisano Delser
    Chiara Batini
    Daniel Zadik
    Mariano Rocchi
    First Published February 16, 2016
  - Alternative splicing modulated by genetic variants demonstrates accelerated evolution regulated by highly conserved proteins
    Yun-Hua Esther Hsiao
    Jae Hoon Bahn
    Xianzhi Lin
    Tak-Ming Chan
    Rena Wang
    First Published February 17, 2016
  - Gene regulation and speciation in house mice
    Katya L. Mack
    Polly Campbell
    Michael W. Nachman
    First Published February 1, 2016
  - A-type lamins bind both hetero- and euchromatin, the latter being regulated by lamina-associated polypeptide 2 alpha
    Kevin Gesson
    Philipp Rescheneder
    Michael P. Skoruppa
    Arndt von Haeseler
    Thomas Dechat
    First Published January 21, 2016
  - Targeted resequencing identifies PTCH1 as a major contributor to ocular developmental anomalies and extends the SOX2 regulatory network
    Nicolas Chassaing
    Erica E. Davis
    Kelly L. McKnight
    Adrienne R. Niederriter
    Alexandre Causse
    Véronique David Annaïck Desmaison Sophie Lamarre Catherine Vincent-Delorme Laurent Pasquier Christine Coubes Didier Lacombe Massimiliano Rossi Jean-Louis Dufier Helene Dollfus Josseline Kaplan
    ...[+11 authors]...,
    Nicholas Katsanis
    Heather C. Etchevers
    Stanislas Faguer
    Patrick Calvas
    First Published February 18, 2016
  - Introgression maintains the genetic integrity of the mating-type determining chromosome of the fungus Neurospora tetrasperma
    Pádraic Corcoran
    Jennifer L. Anderson
    David J. Jacobson
    Yu Sun
    Peixiang Ni
    First Published February 18, 2016
  - Genome-wide A-to-I RNA editing in fungi independent of ADAR enzymes
    Huiquan Liu
    Qinhu Wang
    Yi He
    Lingfeng Chen
    Chaofeng Hao
    Cong Jiang
    ...[+1 authors]...,
    Yang Li
    Yafeng Dai
    Zhensheng Kang
    Jin-Rong Xu
    First Published March 2, 2016
  - Drought responsive gene expression regulatory divergence between upland and lowland ecotypes of a perennial C4 grass
    John T. Lovell
    Scott Schwartz
    David B. Lowry
    Eugene V. Shakirov
    Jason E. Bonnette
    Xiaoyu Weng Mei Wang Jenifer Johnson Avinash Sreedasyam
    ...[+4 authors]...,
    Christopher Plott
    Jerry Jenkins
    Jeremy Schmutz
    Thomas E. Juenger
    First Published March 7, 2016
  - Most microRNAs in the single-cell alga Chlamydomonas reinhardtii are produced by Dicer-like 3-mediated cleavage of introns and untranslated regions of coding RNAs
    Adrian A. Valli
    Bruno A.C.M. Santos
    Silvia Hnatova
    Andrew R. Bassett
    Attila Molnar
    First Published March 11, 2016
Methods
- - A time- and cost-effective strategy to sequence mammalian Y Chromosomes: an application to the de novo assembly of gorilla Y
    Marta Tomaszkiewicz
    Samarth Rangavittal
    Monika Cechova
    Rebeca Campos Sanchez
    Howard W. Fescemyer
    Robert Harris Danling Ye Patricia C.M. O'Brien Rayan Chikhi
    ...[+4 authors]...,
    Oliver A. Ryder
    Malcolm A. Ferguson-Smith
    Paul Medvedev
    Kateryna D. Makova
    First Published March 2, 2016
  - A network-based analysis of colon cancer splicing changes reveals a tumorigenesis-favoring regulatory pathway emanating from ELK1
    Dror Hollander
    Maya Donyo
    Nir Atias
    Keren Mekahel
    Zeev Melamed
    Sivan Yannai Galit Lev-Maor Asaf Shilo
    ...[+3 authors]...,
    Schraga Schwartz
    Iris Barshack
    Roded Sharan
    Gil Ast
    First Published February 9, 2016
  - Degradation dynamics of microRNAs revealed by a novel pulse-chase approach
    Matteo J. Marzi
    Francesco Ghini
    Benedetta Cerruti
    Stefano de Pretis
    Paola Bonetti
    Chiara Giacomelli Marcin M. Gorski Theresia Kress
    ...[+3 authors]...,
    Mattia Pelizzola
    Heiko Muller
    Bruno Amati
    Francesco Nicassio
    First Published January 28, 2016

Table of Contents

Volume 26, Issue 4 | April 2016

Research

Transmission of human mtDNA heteroplasmy in the Genome of the Netherlands families: support for a variable-size bottleneck

Great ape Y Chromosome and mitochondrial DNA phylogenies reflect subspecies structure and patterns of mating and dispersal

Alternative splicing modulated by genetic variants demonstrates accelerated evolution regulated by highly conserved proteins

Gene regulation and speciation in house mice

A-type lamins bind both hetero- and euchromatin, the latter being regulated by lamina-associated polypeptide 2 alpha

Targeted resequencing identifies PTCH1 as a major contributor to ocular developmental anomalies and extends the SOX2 regulatory network

Introgression maintains the genetic integrity of the mating-type determining chromosome of the fungus Neurospora tetrasperma

Genome-wide A-to-I RNA editing in fungi independent of ADAR enzymes

Drought responsive gene expression regulatory divergence between upland and lowland ecotypes of a perennial C4 grass

Most microRNAs in the single-cell alga Chlamydomonas reinhardtii are produced by Dicer-like 3-mediated cleavage of introns and untranslated regions of coding RNAs

Methods

A time- and cost-effective strategy to sequence mammalian Y Chromosomes: an application to the de novo assembly of gorilla Y

A network-based analysis of colon cancer splicing changes reveals a tumorigenesis-favoring regulatory pathway emanating from ELK1

Degradation dynamics of microRNAs revealed by a novel pulse-chase approach

Table of Contents

Volume 26, Issue 4 | April 2016

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Research

Methods