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  Transmission of human mtDNA heteroplasmy in the Genome of the Netherlands families: support for a variable-size bottleneck

  • Mingkun Li,
  • Rebecca Rothwell,
  • Martijn Vermaat,
  • Manja Wachsmuth,
  • Roland Schröder,
  • Jeroen F.J. Laros,
  • Mannis van Oven,
  • Paul I.W. de Bakker,
  • Jasper A. Bovenberg,
  • Cornelia M. van Duijn,
  • Gert-Jan B. van Ommen,
  • P. Eline Slagboom,
  • Morris A. Swertz,
  • Cisca Wijmenga,
  • Genome of the Netherlands Consortium,
  • Manfred Kayser,
  • Dorret I. Boomsma,
  • Sebastian Zöllner,
  • Peter de Knijff,
  • and Mark Stoneking

  Genome Res. April 2016 26: 417-426; Published in Advance February 25, 2016, doi:10.1101/gr.203216.115
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  Great ape Y Chromosome and mitochondrial DNA phylogenies reflect subspecies structure and patterns of mating and dispersal

  • Pille Hallast,
  • Pierpaolo Maisano Delser,
  • Chiara Batini,
  • Daniel Zadik,
  • Mariano Rocchi,
  • Werner Schempp,
  • Chris Tyler-Smith,
  • and Mark A. Jobling

  Genome Res. April 2016 26: 427-439; Published in Advance February 16, 2016, doi:10.1101/gr.198754.115
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  Alternative splicing modulated by genetic variants demonstrates accelerated evolution regulated by highly conserved proteins

  • Yun-Hua Esther Hsiao,
  • Jae Hoon Bahn,
  • Xianzhi Lin,
  • Tak-Ming Chan,
  • Rena Wang,
  • and Xinshu Xiao

  Genome Res. April 2016 26: 440-450; Published in Advance February 17, 2016, doi:10.1101/gr.193359.115
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  Gene regulation and speciation in house mice

  • Katya L. Mack,
  • Polly Campbell,
  • and Michael W. Nachman

  Genome Res. April 2016 26: 451-461; Published in Advance February 1, 2016, doi:10.1101/gr.195743.115
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  A-type lamins bind both hetero- and euchromatin, the latter being regulated by lamina-associated polypeptide 2 alpha

  • Kevin Gesson,
  • Philipp Rescheneder,
  • Michael P. Skoruppa,
  • Arndt von Haeseler,
  • Thomas Dechat,
  • and Roland Foisner

  Genome Res. April 2016 26: 462-473; Published in Advance January 21, 2016, doi:10.1101/gr.196220.115
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  Targeted resequencing identifies PTCH1 as a major contributor to ocular developmental anomalies and extends the SOX2 regulatory network

  • Nicolas Chassaing,
  • Erica E. Davis,
  • Kelly L. McKnight,
  • Adrienne R. Niederriter,
  • Alexandre Causse,
  • Véronique David,
  • Annaïck Desmaison,
  • Sophie Lamarre,
  • Catherine Vincent-Delorme,
  • Laurent Pasquier,
  • Christine Coubes,
  • Didier Lacombe,
  • Massimiliano Rossi,
  • Jean-Louis Dufier,
  • Helene Dollfus,
  • Josseline Kaplan,
  • Nicholas Katsanis,
  • Heather C. Etchevers,
  • Stanislas Faguer,
  • and Patrick Calvas

  Genome Res. April 2016 26: 474-485; Published in Advance February 18, 2016, doi:10.1101/gr.196048.115
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  Introgression maintains the genetic integrity of the mating-type determining chromosome of the fungus Neurospora tetrasperma

  • Pádraic Corcoran,
  • Jennifer L. Anderson,
  • David J. Jacobson,
  • Yu Sun,
  • Peixiang Ni,
  • Martin Lascoux,
  • and Hanna Johannesson

  Genome Res. April 2016 26: 486-498; Published in Advance February 18, 2016, doi:10.1101/gr.197244.115
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  Genome-wide A-to-I RNA editing in fungi independent of ADAR enzymes

  • Huiquan Liu,
  • Qinhu Wang,
  • Yi He,
  • Lingfeng Chen,
  • Chaofeng Hao,
  • Cong Jiang,
  • Yang Li,
  • Yafeng Dai,
  • Zhensheng Kang,
  • and Jin-Rong Xu

  Genome Res. April 2016 26: 499-509; Published in Advance March 2, 2016, doi:10.1101/gr.199877.115
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  Drought responsive gene expression regulatory divergence between upland and lowland ecotypes of a perennial C₄ grass

  • John T. Lovell,
  • Scott Schwartz,
  • David B. Lowry,
  • Eugene V. Shakirov,
  • Jason E. Bonnette,
  • Xiaoyu Weng,
  • Mei Wang,
  • Jenifer Johnson,
  • Avinash Sreedasyam,
  • Christopher Plott,
  • Jerry Jenkins,
  • Jeremy Schmutz,
  • and Thomas E. Juenger

  Genome Res. April 2016 26: 510-518; Published in Advance March 7, 2016, doi:10.1101/gr.198135.115
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  Most microRNAs in the single-cell alga Chlamydomonas reinhardtii are produced by Dicer-like 3-mediated cleavage of introns and untranslated regions of coding RNAs

  • Adrian A. Valli,
  • Bruno A.C.M. Santos,
  • Silvia Hnatova,
  • Andrew R. Bassett,
  • Attila Molnar,
  • Betty Y. Chung,
  • and David C. Baulcombe

  Genome Res. April 2016 26: 519-529; Published in Advance March 11, 2016, doi:10.1101/gr.199703.115
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