Volume 26, Issue 3 | March 2016

Research
- - Whole-genome sequence analyses of Western Central African Pygmy hunter-gatherers reveal a complex demographic history and identify candidate genes under positive natural selection
    PingHsun Hsieh
    Krishna R. Veeramah
    Joseph Lachance
    Sarah A. Tishkoff
    Jeffrey D. Wall
    First Published February 17, 2016
  - Model-based analyses of whole-genome data reveal a complex evolutionary history involving archaic introgression in Central African Pygmies
    PingHsun Hsieh
    August E. Woerner
    Jeffrey D. Wall
    Joseph Lachance
    Sarah A. Tishkoff
    First Published February 17, 2016
  - The life history of retrocopies illuminates the evolution of new mammalian genes
    Francesco Nicola Carelli
    Takashi Hayakawa
    Yasuhiro Go
    Hiroo Imai
    Maria Warnefors
    First Published January 4, 2016
  - Concerted activities of Mcm4, Sld3, and Dbf4 in control of origin activation and DNA replication fork progression
    Yi-Jun Sheu
    Justin B. Kinney
    Bruce Stillman
    First Published January 5, 2016
  - TP53 regulates miRNA association with AGO2 to remodel the miRNA–mRNA interaction network
    Jonathan Krell
    Justin Stebbing
    Claudia Carissimi
    Aleksandra F. Dabrowska
    Alexander de Giorgio
    Adam E. Frampton Victoria Harding
    ...[+2 authors]...,
    Valerio Fulci
    Giuseppe Macino
    Teresa Colombo
    Leandro Castellano
    First Published December 23, 2015
Methods
- - Chromosome-scale shotgun assembly using an in vitro method for long-range linkage
    Nicholas H. Putnam
    Brendan L. O'Connell
    Jonathan C. Stites
    Brandon J. Rice
    Marco Blanchette
    Robert Calef Christopher J. Troll Andrew Fields Paul D. Hartley
    ...[+4 authors]...,
    Charles W. Sugnet
    David Haussler
    Daniel S. Rokhsar
    Richard E. Green
    First Published February 4, 2016
  - Mapping nucleosome positions using DNase-seq
    Jianling Zhong
    Kaixuan Luo
    Peter S. Winter
    Gregory E. Crawford
    Edwin S. Iversen
    First Published January 15, 2016
  - Quantitative BrdU immunoprecipitation method demonstrates that Fkh1 and Fkh2 are rate-limiting activators of replication origins that reprogram replication timing in G1 phase
    Jared M. Peace
    Sandra K. Villwock
    John L. Zeytounian
    Yan Gan
    Oscar M. Aparicio
    First Published January 4, 2016
  - Assessment of megabase-scale somatic copy number variation using single-cell sequencing
    Kristin A. Knouse
    Jie Wu
    Angelika Amon
    First Published January 15, 2016
  - Models of human core transcriptional regulatory circuitries
    Violaine Saint-André
    Alexander J. Federation
    Charles Y. Lin
    Brian J. Abraham
    Jessica Reddy
    First Published February 3, 2016
  - A new class of temporarily phenotypic enhancers identified by CRISPR/Cas9-mediated genetic screening
    Yarui Diao
    Bin Li
    Zhipeng Meng
    Inkyung Jung
    Ah Young Lee
    Jesse Dixon
    ...[+1 authors]...,
    Lenka Maliskova
    Kun-liang Guan
    Yin Shen
    Bing Ren
    First Published January 26, 2016
  - Genome-wide target specificities of CRISPR-Cas9 nucleases revealed by multiplex Digenome-seq
    Daesik Kim
    Sojung Kim
    Sunghyun Kim
    Jeongbin Park
    Jin-Soo Kim
    First Published January 19, 2016

Table of Contents

Volume 26, Issue 3 | March 2016

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Research

Methods