Table of Contents

Research

• Select this article

  RBFOX and PTBP1 proteins regulate the alternative splicing of micro-exons in human brain transcripts

  • Yang I. Li,
  • Luis Sanchez-Pulido,
  • Wilfried Haerty,
  • and Chris P. Ponting

  Genome Res. January 2015 25: 1-13; Published in Advance December 18, 2014, doi:10.1101/gr.181990.114
  • Abstract
  • Full Text
  • Full Text (PDF)
  • Supplemental Material

  OPEN ACCESS ARTICLE
• Select this article

  U2AF1 mutations alter splice site recognition in hematological malignancies

  • Janine O. Ilagan,
  • Aravind Ramakrishnan,
  • Brian Hayes,
  • Michele E. Murphy,
  • Ahmad S. Zebari,
  • Philip Bradley,
  • and Robert K. Bradley

  Genome Res. January 2015 25: 14-26; Published in Advance September 29, 2014, doi:10.1101/gr.181016.114
  • Abstract
  • Full Text
  • Full Text (PDF)
  • Supplemental Material

  OPEN ACCESS ARTICLE
• Select this article

  H3K4me1 marks DNA regions hypomethylated during aging in human stem and differentiated cells

  • Agustín F. Fernández,
  • Gustavo F. Bayón,
  • Rocío G. Urdinguio,
  • Estela G. Toraño,
  • María G. García,
  • Antonella Carella,
  • Sandra Petrus-Reurer,
  • Cecilia Ferrero,
  • Pablo Martinez-Camblor,
  • Isabel Cubillo,
  • Javier García-Castro,
  • Jesús Delgado-Calle,
  • Flor M. Pérez-Campo,
  • José A. Riancho,
  • Clara Bueno,
  • Pablo Menéndez,
  • Anouk Mentink,
  • Katia Mareschi,
  • Fabian Claire,
  • Corrado Fagnani,
  • Emanuela Medda,
  • Virgilia Toccaceli,
  • Sonia Brescianini,
  • Sebastián Moran,
  • Manel Esteller,
  • Alexandra Stolzing,
  • Jan de Boer,
  • Lorenza Nisticò,
  • Maria A. Stazi,
  • and Mario F. Fraga

  Genome Res. January 2015 25: 27-40; Published in Advance September 30, 2014, doi:10.1101/gr.169011.113
  • Abstract
  • Full Text
  • Full Text (PDF)
  • Supplemental Material
  • Revised Supplemental Material
• Select this article

  Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal

  • Juan L. Mateo,
  • Debbie L.C. van den Berg,
  • Maximilian Haeussler,
  • Daniela Drechsel,
  • Zachary B. Gaber,
  • Diogo S. Castro,
  • Paul Robson,
  • Q. Richard Lu,
  • Gregory E. Crawford,
  • Paul Flicek,
  • Laurence Ettwiller,
  • Joachim Wittbrodt,
  • François Guillemot,
  • and Ben Martynoga

  Genome Res. January 2015 25: 41-56; Published in Advance October 7, 2014, doi:10.1101/gr.173435.114
  • Abstract
  • Full Text
  • Full Text (PDF)
  • Supplemental Material
• Select this article

  Shroom3 contributes to the maintenance of the glomerular filtration barrier integrity

  • Nan Cher Yeo,
  • Caitlin C. O’Meara,
  • Jason A. Bonomo,
  • Kerry N. Veth,
  • Ritu Tomar,
  • Michael J. Flister,
  • Iain A. Drummond,
  • Donald W. Bowden,
  • Barry I. Freedman,
  • Jozef Lazar,
  • Brian A. Link,
  • and Howard J. Jacob

  Genome Res. January 2015 25: 57-65; Published in Advance October 1, 2014, doi:10.1101/gr.182881.114
  • Abstract
  • Full Text
  • Full Text (PDF)
  • Supplemental Material
• Select this article

  Profiling the RNA editomes of wild-type C. elegans and ADAR mutants

  • Han-Qing Zhao,
  • Pan Zhang,
  • Hua Gao,
  • Xiandong He,
  • Yanmei Dou,
  • August Y. Huang,
  • Xi-Ming Liu,
  • Adam Y. Ye,
  • Meng-Qiu Dong,
  • and Liping Wei

  Genome Res. January 2015 25: 66-75; Published in Advance November 4, 2014, doi:10.1101/gr.176107.114
  • Abstract
  • Full Text
  • Full Text (PDF)
  • Supplemental Material

  OPEN ACCESS ARTICLE
• Select this article

  Defining heterochromatin in C. elegans through genome-wide analysis of the heterochromatin protein 1 homolog HPL-2

  • Jacob M. Garrigues,
  • Simone Sidoli,
  • Benjamin A. Garcia,
  • and Susan Strome

  Genome Res. January 2015 25: 76-88; Published in Advance December 2, 2014, doi:10.1101/gr.180489.114
  • Abstract
  • Full Text
  • Full Text (PDF)
  • Supplemental Material
• Select this article

  Two new insulator proteins, Pita and ZIPIC, target CP190 to chromatin

  • Oksana Maksimenko,
  • Marek Bartkuhn,
  • Viacheslav Stakhov,
  • Martin Herold,
  • Nickolay Zolotarev,
  • Theresa Jox,
  • Melanie K. Buxa,
  • Ramona Kirsch,
  • Artem Bonchuk,
  • Anna Fedotova,
  • Olga Kyrchanova,
  • Rainer Renkawitz,
  • and Pavel Georgiev

  Genome Res. January 2015 25: 89-99; Published in Advance October 23, 2014, doi:10.1101/gr.174169.114
  • Abstract
  • Full Text
  • Full Text (PDF)
  • Supplemental Material

  OPEN ACCESS ARTICLE
• Select this article

  Intron evolution in Neurospora: the role of mutational bias and selection

  • Yu Sun,
  • Carrie A. Whittle,
  • Pádraic Corcoran,
  • and Hanna Johannesson

  Genome Res. January 2015 25: 100-110; Published in Advance October 23, 2014, doi:10.1101/gr.175653.114
  • Abstract
  • Full Text
  • Full Text (PDF)
  • Supplemental Material
• Select this article

  Genome sequencing defines phylogeny and spread of methicillin-resistant Staphylococcus aureus in a high transmission setting

  • Steven Y.C. Tong,
  • Matthew T.G. Holden,
  • Emma K. Nickerson,
  • Ben S. Cooper,
  • Claudio U. Köser,
  • Anne Cori,
  • Thibaut Jombart,
  • Simon Cauchemez,
  • Christophe Fraser,
  • Vanaporn Wuthiekanun,
  • Janjira Thaipadungpanit,
  • Maliwan Hongsuwan,
  • Nicholas P. Day,
  • Direk Limmathurotsakul,
  • Julian Parkhill,
  • and Sharon J. Peacock

  Genome Res. January 2015 25: 111-118; Published in Advance December 9, 2014, doi:10.1101/gr.174730.114
  • Abstract
  • Full Text
  • Full Text (PDF)
  • Supplemental Material

  OPEN ACCESS ARTICLE
• Select this article

  Large-scale genomic sequencing of extraintestinal pathogenic Escherichia coli strains

  • Stephen J. Salipante,
  • David J. Roach,
  • Jacob O. Kitzman,
  • Matthew W. Snyder,
  • Bethany Stackhouse,
  • Susan M. Butler-Wu,
  • Choli Lee,
  • Brad T. Cookson,
  • and Jay Shendure

  Genome Res. January 2015 25: 119-128; Published in Advance November 4, 2014, doi:10.1101/gr.180190.114
  • Abstract
  • Full Text
  • Full Text (PDF)
  • Supplemental Material
• Select this article

  Burkholderia pseudomallei sequencing identifies genomic clades with distinct recombination, accessory, and epigenetic profiles

  • Tannistha Nandi,
  • Matthew T.G. Holden,
  • Xavier Didelot,
  • Kurosh Mehershahi,
  • Justin A. Boddey,
  • Ifor Beacham,
  • Ian Peak,
  • John Harting,
  • Primo Baybayan,
  • Yan Guo,
  • Susana Wang,
  • Lee Chee How,
  • Bernice Sim,
  • Angela Essex-Lopresti,
  • Mitali Sarkar-Tyson,
  • Michelle Nelson,
  • Sophie Smither,
  • Catherine Ong,
  • Lay Tin Aw,
  • Chua Hui Hoon,
  • Stephen Michell,
  • David J. Studholme,
  • Richard Titball,
  • Swaine L. Chen,
  • Julian Parkhill,
  • and Patrick Tan

  Genome Res. January 2015 25: 129-141; Published in Advance September 18, 2014, doi:10.1101/gr.177543.114
  • Abstract
  • Full Text
  • Full Text (PDF)
  • Supplemental Material