Volume 18, Issue 1 | January 2008

ARTICLE
- - A code for transcription initiation in mammalian genomes
    Martin C. Frith
    Eivind Valen
    Anders Krogh
    Yoshihide Hayashizaki
    Piero Carninci
    First Published November 21, 2007
LETTERS
- - Genomic architecture and inheritance of human ribosomal RNA gene clusters
    Dawn M. Stults
    Michael W. Killen
    Heather H. Pierce
    Andrew J. Pierce
    First Published November 19, 2007
  - Massively parallel bisulphite pyrosequencing reveals the molecular complexity of breast cancer-associated cytosine-methylation patterns obtained from tissue and serum DNA
    Yulia Korshunova
    Rebecca K. Maloney
    Nathan Lakey
    Robert W. Citek
    Blaire Bacher
    Arief Budiman Jared M. Ordway
    ...[+2 authors]...,
    W. Richard McCombie
    Jorge Leon
    Jeffrey A. Jeddeloh
    John D. McPherson
    First Published November 21, 2007
  - The genome-wide determinants of human and chimpanzee microsatellite evolution
    Yogeshwar D. Kelkar
    Svitlana Tyekucheva
    Francesca Chiaromonte
    Kateryna D. Makova
    First Published November 21, 2007
  - A nuclear matrix attachment site in the 4q35 locus has an enhancer-blocking activity in vivo: Implications for the facio-scapulo-humeral dystrophy
    Andrei Petrov
    Jeanne Allinne
    Iryna Pirozhkova
    Dalila Laoudj
    Marc Lipinski
    First Published November 21, 2007
  - Genome-wide mapping and analysis of active promoters in mouse embryonic stem cells and adult organs
    Leah O. Barrera
    Zirong Li
    Andrew D. Smith
    Karen C. Arden
    Webster K. Cavenee
    First Published November 27, 2007
  - Genomic copy number and expression variation within the C57BL/6J inbred mouse strain
    Dawn E. Watkins-Chow
    William J. Pavan
    First Published November 21, 2007
  - Genome-wide patterns of gene flow across a house mouse hybrid zone
    Katherine C. Teeter
    Bret A. Payseur
    Leslie W. Harris
    Margaret A. Bakewell
    Lisa M. Thibodeau
    Janelle E. O’Brien
    ...[+1 authors]...,
    James G. Krenz
    Maria A. Sans-Fuentes
    Michael W. Nachman
    Priscilla K. Tucker
    First Published November 19, 2007
  - Features of 5′-splice-site efficiency derived from disease-causing mutations and comparative genomics
    Xavier Roca
    Andrew J. Olson
    Atmakuri R. Rao
    Espen Enerly
    Vessela N. Kristensen
    First Published November 21, 2007
  - Large-scale comparative analysis of splicing signals and their corresponding splicing factors in eukaryotes
    Schraga Schwartz
    João Silva
    David Burstein
    Tal Pupko
    Eduardo Eyras
    First Published November 21, 2007
  - Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
    Guo-Qing Tang
    E. Stuart Maxwell
    First Published November 21, 2007
  - Genomics, transcriptomics, and peptidomics of neuropeptides and protein hormones in the red flour beetle Tribolium castaneum
    Bin Li
    Reinhard Predel
    Susanne Neupert
    Frank Hauser
    Yoshiaki Tanaka
    Giuseppe Cazzamali Michael Williamson Yasuyuki Arakane Peter Verleyen
    ...[+4 authors]...,
    Liliane Schoofs
    Joachim Schachtner
    Cornelis J.P. Grimmelikhuijzen
    Yoonseong Park
    First Published November 19, 2007
  - Identification of novel modulators of mitochondrial function by a genome-wide RNAi screen in Drosophila melanogaster
    Jian Chen
    Xiaoying Shi
    Ranjani Padmanabhan
    Qiong Wang
    Zhidan Wu
    First Published November 27, 2007
  - A burst of protein sequence evolution and a prolonged period of asymmetric evolution follow gene duplication in yeast
    Devin R. Scannell
    Kenneth H. Wolfe
    First Published November 19, 2007
  - Universal patterns of purifying selection at noncoding positions in bacteria
    Nacho Molina
    Erik van Nimwegen
    First Published November 21, 2007
  - Chlamydia trachomatis: Genome sequence analysis of lymphogranuloma venereum isolates
    Nicholas R. Thomson
    Matthew T.G. Holden
    Caroline Carder
    Nicola Lennard
    Sarah J. Lockey
    Pete Marsh Paul Skipp C. David O’Connor Ian Goodhead Halina Norbertzcak Barbara Harris Doug Ormond Richard Rance
    ...[+8 authors]...,
    Michael A. Quail
    Julian Parkhill
    Richard S. Stephens
    Ian N. Clarke
    First Published November 21, 2007
Methods
- - Gene expression profiling by massively parallel sequencing
    Tatiana Teixeira Torres
    Muralidhar Metta
    Birgit Ottenwälder
    Christian Schlötterer
    First Published November 21, 2007
  - Networks of genomic co-occurrence capture characteristics of human influenza A (H3N2) evolution
    Xiangjun Du
    Zhuo Wang
    Aiping Wu
    Lin Song
    Yang Cao
    First Published November 21, 2007
RESOURCE
- - MAKER: An easy-to-use annotation pipeline designed for emerging model organism genomes
    Brandi L. Cantarel
    Ian Korf
    Sofia M.C. Robb
    Genis Parra
    Eric Ross
    First Published November 19, 2007
ERRATUM
- - Erratum
    First Published January 2, 2008

Table of Contents

Volume 18, Issue 1 | January 2008

ARTICLE

A code for transcription initiation in mammalian genomes

LETTERS

Genomic architecture and inheritance of human ribosomal RNA gene clusters

Massively parallel bisulphite pyrosequencing reveals the molecular complexity of breast cancer-associated cytosine-methylation patterns obtained from tissue and serum DNA

The genome-wide determinants of human and chimpanzee microsatellite evolution

A nuclear matrix attachment site in the 4q35 locus has an enhancer-blocking activity in vivo: Implications for the facio-scapulo-humeral dystrophy

Genome-wide mapping and analysis of active promoters in mouse embryonic stem cells and adult organs

Genomic copy number and expression variation within the C57BL/6J inbred mouse strain

Genome-wide patterns of gene flow across a house mouse hybrid zone

Features of 5′-splice-site efficiency derived from disease-causing mutations and comparative genomics

Large-scale comparative analysis of splicing signals and their corresponding splicing factors in eukaryotes

Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation

Genomics, transcriptomics, and peptidomics of neuropeptides and protein hormones in the red flour beetle Tribolium castaneum

Identification of novel modulators of mitochondrial function by a genome-wide RNAi screen in Drosophila melanogaster

A burst of protein sequence evolution and a prolonged period of asymmetric evolution follow gene duplication in yeast

Universal patterns of purifying selection at noncoding positions in bacteria

Chlamydia trachomatis: Genome sequence analysis of lymphogranuloma venereum isolates

Methods

Gene expression profiling by massively parallel sequencing

Networks of genomic co-occurrence capture characteristics of human influenza A (H3N2) evolution

RESOURCE

MAKER: An easy-to-use annotation pipeline designed for emerging model organism genomes

ERRATUM

Erratum

Table of Contents

Volume 18, Issue 1 | January 2008

Share this issue

ARTICLE

LETTERS

Methods

RESOURCE

ERRATUM