Volume 17, Issue 12 | December 2007

REVIEW
- - The influence of genetic variation on gene expression
    Rohan B.H. Williams
    Eva K.F. Chan
    Mark J. Cowley
    Peter F.R. Little
    First Published December 3, 2007
LETTERS
- - Confirmation study of prostate cancer risk variants at 8q24 in African Americans identifies a novel risk locus
    Christiane Robbins
    Jada Benn Torres
    Stanley Hooker
    Carolina Bonilla
    Wenndy Hernandez
    First Published October 31, 2007
  - Computational and experimental identification of novel human imprinted genes
    Philippe P. Luedi
    Fred S. Dietrich
    Jennifer R. Weidman
    Jason M. Bosko
    Randy L. Jirtle
    First Published November 30, 2007
  - Gene-specific vulnerability to imprinting variability in human embryonic stem cell lines
    Kee-Pyo Kim
    Alexandra Thurston
    Christine Mummery
    Dorien Ward-van Oostwaard
    Helen Priddle
    First Published November 7, 2007
  - Significant gene content variation characterizes the genomes of inbred mouse strains
    Gene Cutler
    Lisa A. Marshall
    Ni Chin
    Helene Baribault
    Paul D. Kassner
    First Published November 7, 2007
  - Hitchhiking effects of recurrent beneficial amino acid substitutions in the Drosophila melanogaster genome
    Peter Andolfatto
    First Published November 7, 2007
Methods
- - Targeted discovery of novel human exons by comparative genomics
    Adam Siepel
    Mark Diekhans
    Broňa Brejová
    Laura Langton
    Michael Stevens
    Charles L.G. Comstock Colleen Davis Brent Ewing Shelly Oommen Christopher Lau Hung-Chun Yu Jianfeng Li Bruce A. Roe Phil Green
    ...[+9 authors]...,
    Daniela S. Gerhard
    Gary Temple
    David Haussler
    Michael R. Brent
    First Published November 7, 2007
  - Examining protein–protein interactions using endogenously tagged yeast arrays: The Cross-and-Capture system
    Bernhard Suter
    Michael J. Fetchko
    Ralph Imhof
    Christopher I. Graham
    Ingrid Stoffel-Studer
    Caroline Zbinden Maanasa Raghavan Lianet Lopez Lucija Beneti Jacqueline Hort Jeffrey Fillingham
    ...[+6 authors]...,
    Jack F. Greenblatt
    Guri Giaever
    Corey Nislow
    Igor Stagljar
    First Published November 7, 2007
RESOURCES
- - A second-generation combined linkage–physical map of the human genome
    Tara C. Matise
    Fang Chen
    Wenwei Chen
    Francisco M. De La Vega
    Mark Hansen
    Chunsheng He Fiona C.L. Hyland Giulia C. Kennedy Xiangyang Kong
    ...[+4 authors]...,
    Sarah S. Murray
    Janet S. Ziegle
    William C.L. Stewart
    Steven Buyske
    First Published November 7, 2007
  - Sequence-based estimation of minisatellite and microsatellite repeat variability
    Matthieu Legendre
    Nathalie Pochet
    Theodore Pak
    Kevin J. Verstrepen
    First Published October 31, 2007
  - 28-Way vertebrate alignment and conservation track in the UCSC Genome Browser
    Webb Miller
    Kate Rosenbloom
    Ross C. Hardison
    Minmei Hou
    James Taylor
    Brian Raney Richard Burhans David C. King Robert Baertsch Daniel Blankenberg Sergei L. Kosakovsky Pond Anton Nekrutenko Belinda Giardine Robert S. Harris Svitlana Tyekucheva Mark Diekhans Thomas H. Pringle William J. Murphy Arthur Lesk George M. Weinstock Kerstin Lindblad-Toh Richard A. Gibbs
    ...[+17 authors]...,
    Eric S. Lander
    Adam Siepel
    David Haussler
    W. James Kent
    First Published November 5, 2007
  - Comparative genome analysis across a kingdom of eukaryotic organisms: Specialization and diversification in the Fungi
    Michael J. Cornell
    Intikhab Alam
    Darren M. Soanes
    Han Min Wong
    Cornelia Hedeler
    Norman W. Paton
    ...[+1 authors]...,
    Magnus Rattray
    Simon J. Hubbard
    Nicholas J. Talbot
    Stephen G. Oliver
    First Published November 5, 2007
12 Drosophila Genomes/Letter
- - Revisiting the protein-coding gene catalog of Drosophila melanogaster using 12 fly genomes
    Michael F. Lin
    Joseph W. Carlson
    Madeline A. Crosby
    Beverley B. Matthews
    Charles Yu
    Soo Park Kenneth H. Wan Andrew J. Schroeder L. Sian Gramates Susan E. St. Pierre Margaret Roark Kenneth L. Wiley Rob J. Kulathinal Peili Zhang Kyl V. Myrick
    ...[+10 authors]...,
    Jerry V. Antone
    Susan E. Celniker
    William M. Gelbart
    Manolis Kellis
    First Published November 7, 2007
  - Evolutionary rate analyses of orthologs and paralogs from 12 Drosophila genomes
    Andreas Heger
    Chris P. Ponting
    First Published November 7, 2007
  - Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
    J. Graham Ruby
    Alexander Stark
    Wendy K. Johnston
    Manolis Kellis
    David P. Bartel
    First Published November 7, 2007
  - Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
    Alexander Stark
    Pouya Kheradpour
    Leopold Parts
    Julius Brennecke
    Emily Hodges
    First Published November 7, 2007
  - Genome-scale analysis of positionally relocated genes
    Arjun Bhutkar
    Susan M. Russo
    Temple F. Smith
    William M. Gelbart
    First Published November 7, 2007
  - Sequence variation within the rRNA gene loci of 12 Drosophila species
    Deborah E. Stage
    Thomas H. Eickbush
    First Published November 7, 2007
  - Genomic regulatory blocks underlie extensive microsynteny conservation in insects
    Pär G. Engström
    Shannan J. Ho Sui
    Øyvind Drivenes
    Thomas S. Becker
    Boris Lenhard
    First Published November 7, 2007
  - Drosophila telomeric retrotransposons derived from an ancestral element that was recruited to replace telomerase
    Alfredo Villasante
    José P. Abad
    Rosario Planelló
    María Méndez-Lago
    Susan E. Celniker
    First Published November 7, 2007
12 Drosophila Genomes/Methods
- - Reliable prediction of regulator targets using 12 Drosophila genomes
    Pouya Kheradpour
    Alexander Stark
    Sushmita Roy
    Manolis Kellis
    First Published November 7, 2007
  - Accurate gene-tree reconstruction by learning gene- and species-specific substitution rates across multiple complete genomes
    Matthew D. Rasmussen
    Manolis Kellis
    First Published November 7, 2007

Table of Contents

Volume 17, Issue 12 | December 2007

REVIEW

The influence of genetic variation on gene expression

LETTERS

Confirmation study of prostate cancer risk variants at 8q24 in African Americans identifies a novel risk locus

Computational and experimental identification of novel human imprinted genes

Gene-specific vulnerability to imprinting variability in human embryonic stem cell lines

Significant gene content variation characterizes the genomes of inbred mouse strains

Hitchhiking effects of recurrent beneficial amino acid substitutions in the Drosophila melanogaster genome

Methods

Targeted discovery of novel human exons by comparative genomics

Examining protein–protein interactions using endogenously tagged yeast arrays: The Cross-and-Capture system

RESOURCES

A second-generation combined linkage–physical map of the human genome

Sequence-based estimation of minisatellite and microsatellite repeat variability

28-Way vertebrate alignment and conservation track in the UCSC Genome Browser

Comparative genome analysis across a kingdom of eukaryotic organisms: Specialization and diversification in the Fungi

12 Drosophila Genomes/Letter

Revisiting the protein-coding gene catalog of Drosophila melanogaster using 12 fly genomes

Evolutionary rate analyses of orthologs and paralogs from 12 Drosophila genomes

Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs

Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes

Genome-scale analysis of positionally relocated genes

Sequence variation within the rRNA gene loci of 12 Drosophila species

Genomic regulatory blocks underlie extensive microsynteny conservation in insects

Drosophila telomeric retrotransposons derived from an ancestral element that was recruited to replace telomerase

12 Drosophila Genomes/Methods

Reliable prediction of regulator targets using 12 Drosophila genomes

Accurate gene-tree reconstruction by learning gene- and species-specific substitution rates across multiple complete genomes

Table of Contents

Volume 17, Issue 12 | December 2007

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REVIEW

LETTERS

Methods

RESOURCES

12 Drosophila Genomes/Letter

12 Drosophila Genomes/Methods