Volume 17, Issue 11 | November 2007

COMMENTARY
- - 2× genomes—Does depth matter?
    Phil Green
    First Published November 1, 2007
ARTICLES
- - A comprehensive ChIP–chip analysis of E2F1, E2F4, and E2F6 in normal and tumor cells reveals interchangeable roles of E2F family members
    Xiaoqin Xu
    Mark Bieda
    Victor X. Jin
    Alina Rabinovich
    Mathew J. Oberley
    First Published October 1, 2007
  - Breed relationships facilitate fine-mapping studies: A 7.8-kb deletion cosegregates with Collie eye anomaly across multiple dog breeds
    Heidi G. Parker
    Anna V. Kukekova
    Dayna T. Akey
    Orly Goldstein
    Ewen F. Kirkness
    Kathleen C. Baysac
    ...[+1 authors]...,
    Dana S. Mosher
    Gustavo D. Aguirre
    Gregory M. Acland
    Elaine A. Ostrander
    First Published October 4, 2007
  - Reductive evolution of architectural repertoires in proteomes and the birth of the tripartite world
    Minglei Wang
    Liudmila S. Yafremava
    Derek Caetano-Anollés
    Jay E. Mittenthal
    Gustavo Caetano-Anollés
    First Published October 1, 2007
LETTERS
- - Altered adenosine-to-inosine RNA editing in human cancer
    Nurit Paz
    Erez Y. Levanon
    Ninette Amariglio
    Amy B. Heimberger
    Zvi Ram
    Shlomi Constantini Zohar S. Barbash Konstantin Adamsky Michal Safran Avi Hirschberg Meir Krupsky Issachar Ben-Dov Simona Cazacu
    ...[+8 authors]...,
    Tom Mikkelsen
    Chaya Brodie
    Eli Eisenberg
    Gideon Rechavi
    First Published October 1, 2007
  - Information capture using SNPs from HapMap and whole-genome chips differs in a sample of inflammatory and cardiovascular gene-centric regions from genome-wide estimates
    Chris Wallace
    Richard J. Dobson
    Patricia B. Munroe
    Mark J. Caulfield
    First Published September 25, 2007
  - Comparative analysis of chicken chromosome 28 provides new clues to the evolutionary fragility of gene-rich vertebrate regions
    Laurie Gordon
    Shan Yang
    Mary Tran-Gyamfi
    Dan Baggott
    Mari Christensen
    Aaron Hamilton Richard Crooijmans
    ...[+2 authors]...,
    Martien Groenen
    Susan Lucas
    Ivan Ovcharenko
    Lisa Stubbs
    First Published October 5, 2007
  - An Arabidopsis gene network based on the graphical Gaussian model
    Shisong Ma
    Qingqiu Gong
    Hans J. Bohnert
    First Published October 5, 2007
  - Systematic condition-dependent annotation of metabolic genes
    Tomer Shlomi
    Markus Herrgard
    Vasiliy Portnoy
    Efrat Naim
    Bernhard Ø. Palsson
    First Published September 25, 2007
  - Functional and evolutionary implications of enhanced genomic analysis of rhomboid intramembrane proteases
    Marius K. Lemberg
    Matthew Freeman
    First Published October 15, 2007
  - The rise and spread of a new pathogen: Seroresistant Moraxella catarrhalis
    Thierry Wirth
    Giovanna Morelli
    Barica Kusecek
    Alex van Belkum
    Cindy van der Schee
    First Published September 25, 2007
  - Lateral gene transfer between obligate intracellular bacteria: Evidence from the Rickettsia massiliae genome
    Guillaume Blanc
    Hiroyuki Ogata
    Catherine Robert
    Stéphane Audic
    Jean-Michel Claverie
    First Published October 4, 2007
Methods
- - PennCNV: An integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data
    Kai Wang
    Mingyao Li
    Dexter Hadley
    Rui Liu
    Joseph Glessner
    First Published October 5, 2007
RESOURCES
- - Initial sequence and comparative analysis of the cat genome
    Joan U. Pontius
    James C. Mullikin
    Douglas R. Smith
    Kerstin Lindblad-Toh
    Sante Gnerre
    Michele Clamp Jean Chang Robert Stephens Beena Neelam Natalia Volfovsky Alejandro A. Schäffer Richa Agarwala Kristina Narfström William J. Murphy Urs Giger Alfred L. Roca Agostinho Antunes Marilyn Menotti-Raymond Naoya Yuhki Jill Pecon-Slattery
    ...[+15 authors]...,
    Warren E. Johnson
    Guillaume Bourque
    Glenn Tesler
    Stephen J. O’Brien
    First Published November 1, 2007
  - Islands of euchromatin-like sequence and expressed polymorphic sequences within the short arm of human chromosome 21
    Robert Lyle
    Paola Prandini
    Kazutoyo Osoegawa
    Boudewijn ten Hallers
    Sean Humphray
    Baoli Zhu Eduardo Eyras Robert Castelo Christine P. Bird Sarantos Gagos Carol Scott Antony Cox Samuel Deutsch Catherine Ucla Marc Cruts Sophie Dahoun Xinwei She Frederique Bena Sheng-Yue Wang Christine Van Broeckhoven Evan E. Eichler Roderic Guigo
    ...[+17 authors]...,
    Jane Rogers
    Pieter J. de Jong
    Alexandre Reymond
    Stylianos E. Antonarakis
    First Published September 25, 2007
  - SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing
    Juliane C. Dohm
    Claudio Lottaz
    Tatiana Borodina
    Heinz Himmelbauer
    First Published October 1, 2007

Table of Contents

Volume 17, Issue 11 | November 2007

COMMENTARY

2× genomes—Does depth matter?

ARTICLES

A comprehensive ChIP–chip analysis of E2F1, E2F4, and E2F6 in normal and tumor cells reveals interchangeable roles of E2F family members

Breed relationships facilitate fine-mapping studies: A 7.8-kb deletion cosegregates with Collie eye anomaly across multiple dog breeds

Reductive evolution of architectural repertoires in proteomes and the birth of the tripartite world

LETTERS

Altered adenosine-to-inosine RNA editing in human cancer

Information capture using SNPs from HapMap and whole-genome chips differs in a sample of inflammatory and cardiovascular gene-centric regions from genome-wide estimates

Comparative analysis of chicken chromosome 28 provides new clues to the evolutionary fragility of gene-rich vertebrate regions

An Arabidopsis gene network based on the graphical Gaussian model

Systematic condition-dependent annotation of metabolic genes

Functional and evolutionary implications of enhanced genomic analysis of rhomboid intramembrane proteases

The rise and spread of a new pathogen: Seroresistant Moraxella catarrhalis

Lateral gene transfer between obligate intracellular bacteria: Evidence from the Rickettsia massiliae genome

Methods

PennCNV: An integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data

RESOURCES

Initial sequence and comparative analysis of the cat genome

Islands of euchromatin-like sequence and expressed polymorphic sequences within the short arm of human chromosome 21

SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing

Table of Contents

Volume 17, Issue 11 | November 2007

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COMMENTARY

ARTICLES

LETTERS

Methods

RESOURCES