Volume 15, Issue 5 | May 2005

ARTICLES
- - Analysis of long-lived C. elegans daf-2 mutants using serial analysis of gene expression
    Julius Halaschek-Wiener
    Jaswinder S. Khattra
    Sheldon McKay
    Anatoli Pouzyrev
    Jeff M. Stott
    George S. Yang Robert A. Holt
    ...[+2 authors]...,
    Steven J.M. Jones
    Marco A. Marra
    Angela R. Brooks-Wilson
    Donald L. Riddle
    First Published April 18, 2005
  - Generation and evolutionary fate of insertions of organelle DNA in the nuclear genomes of flowering plants
    Christos Noutsos
    Erik Richly
    Dario Leister
    First Published May 2, 2005
  - The Chlamydophila abortus genome sequence reveals an array of variable proteins that contribute to interspecies variation
    Nicholas R. Thomson
    Corin Yeats
    Kenneth Bell
    Matthew T.G. Holden
    Stephen D. Bentley
    Morag Livingstone Ana M. Cerdeño-Tárraga Barbara Harris Jon Doggett Doug Ormond Karen Mungall Kay Clarke Theresa Feltwell Zahra Hance Mandy Sanders Michael A. Quail
    ...[+11 authors]...,
    Claire Price
    Bart G. Barrell
    Julian Parkhill
    David Longbottom
    First Published April 18, 2005
  - Retroviruses and yeast retrotransposons use overlapping sets of host genes
    Becky Irwin
    Michael Aye
    Pierre Baldi
    Nadejda Beliakova-Bethell
    Henry Cheng
    First Published April 18, 2005
LETTERS
- - Under the genomic radar: The Stealth model of Alu amplification
    Kyudong Han
    Jinchuan Xing
    Hui Wang
    Dale J. Hedges
    Randall K. Garber
    First Published May 2, 2005
  - Evolution of base-substitution gradients in primate mitochondrial genomes
    Sameer Z. Raina
    Jeremiah J. Faith
    Todd R. Disotell
    Hervé Seligmann
    Caro-Beth Stewart
    First Published May 2, 2005
  - Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles
    Yoav Gilad
    Scott A. Rifkin
    Paul Bertone
    Mark Gerstein
    Kevin P. White
    First Published May 2, 2005
  - Cis-acting expression quantitative trait loci in mice
    Sudheer Doss
    Eric E. Schadt
    Thomas A. Drake
    Aldons J. Lusis
    First Published April 18, 2005
  - Conservation of regulatory sequences and gene expression patterns in the disintegrating Drosophila Hox gene complex
    Bárbara Negre
    Sònia Casillas
    Magali Suzanne
    Ernesto Sánchez-Herrero
    Michael Akam
    First Published May 2, 2005
  - Identification of functional transcription factor binding sites using closely related Saccharomyces species
    Scott W. Doniger
    Juyoung Huh
    Justin C. Fay
    First Published April 18, 2005
Methods
- - Cell-free cotranslation and selection using in vitro virus for high-throughput analysis of protein–protein interactions and complexes
    Etsuko Miyamoto-Sato
    Masamichi Ishizaka
    Kenichi Horisawa
    Seiji Tateyama
    Hideaki Takashima
    Shinichiro Fuse
    ...[+1 authors]...,
    Kaori Sue
    Naoya Hirai
    Kazuyo Masuoka
    Hiroshi Yanagawa
    First Published May 2, 2005
  - Target-selected mutant screen by TILLING in Drosophila
    Sylke Winkler
    Anja Schwabedissen
    Dana Backasch
    Christian Bökel
    Claudia Seidel
    Stefanie Bönisch Maximilian Fürthauer
    ...[+2 authors]...,
    Antje Kuhrs
    Laura Cobreros
    Michael Brand
    Marcos González-Gaitán
    First Published May 2, 2005
  - Classification of a large microarray data set: Algorithm comparison and analysis of drug signatures
    Georges Natsoulis
    Laurent El Ghaoui
    Gert R.G. Lanckriet
    Alexander M. Tolley
    Fabrice Leroy
    Shane Dunlea
    ...[+1 authors]...,
    Barrett P. Eynon
    Cecelia I. Pearson
    Stuart Tugendreich
    Kurt Jarnagin
    First Published May 2, 2005
RESOURCES
- - Exploring relationships and mining data with the UCSC Gene Sorter
    W.J. Kent
    Fan Hsu
    Donna Karolchik
    Robert M. Kuhn
    Hiram Clawson
    First Published May 2, 2005
  - Begin at the beginning: Predicting genes with 5′ UTRs
    Randall H. Brown
    Samuel S. Gross
    Michael R. Brent
    First Published May 2, 2005
  - Genome-wide assembly and analysis of alternative transcripts in mouse
    Alexei A. Sharov
    Dawood B. Dudekula
    Minoru S.H. Ko
    First Published May 2, 2005

Table of Contents

Volume 15, Issue 5 | May 2005

ARTICLES

Analysis of long-lived C. elegans daf-2 mutants using serial analysis of gene expression

Generation and evolutionary fate of insertions of organelle DNA in the nuclear genomes of flowering plants

The Chlamydophila abortus genome sequence reveals an array of variable proteins that contribute to interspecies variation

Retroviruses and yeast retrotransposons use overlapping sets of host genes

LETTERS

Under the genomic radar: The Stealth model of Alu amplification

Evolution of base-substitution gradients in primate mitochondrial genomes

Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles

Cis-acting expression quantitative trait loci in mice

Conservation of regulatory sequences and gene expression patterns in the disintegrating Drosophila Hox gene complex

Identification of functional transcription factor binding sites using closely related Saccharomyces species

Methods

Cell-free cotranslation and selection using in vitro virus for high-throughput analysis of protein–protein interactions and complexes

Target-selected mutant screen by TILLING in Drosophila

Classification of a large microarray data set: Algorithm comparison and analysis of drug signatures

RESOURCES

Exploring relationships and mining data with the UCSC Gene Sorter

Begin at the beginning: Predicting genes with 5′ UTRs

Genome-wide assembly and analysis of alternative transcripts in mouse

Table of Contents

Volume 15, Issue 5 | May 2005

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ARTICLES

LETTERS

Methods

RESOURCES