Volume 15, Issue 6 | June 2005

ARTICLES
- - Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestris
    Wei Qian
    Yantao Jia
    Shuang-Xi Ren
    Yong-Qiang He
    Jia-Xun Feng
    Ling-Feng Lu Qihong Sun Ge Ying Dong-Jie Tang Hua Tang Wei Wu Pei Hao Lifeng Wang Bo-Le Jiang Shenyan Zeng Wen-Yi Gu Gang Lu Li Rong Yingchuan Tian Zhijian Yao Gang Fu Baoshan Chen Rongxiang Fang Boqin Qiang
    ...[+19 authors]...,
    Zhu Chen
    Guo-Ping Zhao
    Ji-Liang Tang
    Chaozu He
    First Published May 17, 2005
  - Dichotomous splicing signals in exon flanks
    Xiang H-F. Zhang
    Christina S. Leslie
    Lawrence A. Chasin
    First Published June 1, 2005
LETTERS
- - Analysis of 5′ junctions of human LINE-1 and Alu retrotransposons suggests an alternative model for 5′-end attachment requiring microhomology-mediated end-joining
    Nora Zingler
    Ute Willhoeft
    Hans-Peter Brose
    Volker Schoder
    Thomas Jahns
    First Published June 1, 2005
  - Multilocus patterns of nucleotide variability and the demographic and selection history of Drosophila melanogaster populations
    Penelope R. Haddrill
    Kevin R. Thornton
    Brian Charlesworth
    Peter Andolfatto
    First Published June 1, 2005
  - Ultraconserved elements in insect genomes: A highly conserved intronic sequence implicated in the control of homothorax mRNA splicing
    Evgeny A. Glazov
    Michael Pheasant
    Elizabeth A. McGraw
    Gill Bejerano
    John S. Mattick
    First Published May 17, 2005
  - Operon formation is driven by co-regulation and not by horizontal gene transfer
    Morgan N. Price
    Katherine H. Huang
    Adam P. Arkin
    Eric J. Alm
    First Published June 1, 2005
  - Genome-scale analysis of Streptomyces coelicolor A3(2) metabolism
    Irina Borodina
    Preben Krabben
    Jens Nielsen
    First Published June 1, 2005
Methods
- - Direct isolation and identification of promoters in the human genome
    Tae Hoon Kim
    Leah O. Barrera
    Chunxu Qu
    Sara Van Calcar
    Nathan D. Trinklein
    Sara J. Cooper Rosa M. Luna
    ...[+2 authors]...,
    Christopher K. Glass
    Michael G. Rosenfeld
    Richard M. Myers
    Bing Ren
    First Published May 17, 2005
  - Footer: A quantitative comparative genomics method for efficient recognition of cis-regulatory elements
    David L. Corcoran
    Eleanor Feingold
    Jessica Dominick
    Marietta Wright
    Jo Harnaha
    First Published June 1, 2005
  - Discovering functional transcription-factor combinations in the human cell cycle
    Zhou Zhu
    Jay Shendure
    George M. Church
    First Published June 1, 2005
  - Discovering regulatory binding-site modules using rule-based learning
    Torgeir R. Hvidsten
    Bartosz Wilczyński
    Andriy Kryshtafovych
    Jerzy Tiuryn
    Jan Komorowski
    First Published June 1, 2005
  - Identification of genomic features using microsyntenies of domains: Domain teams
    Sophie Pasek
    Anne Bergeron
    Jean-Loup Risler
    Alexandra Louis
    Emmanuelle Ollivier
    First Published May 17, 2005
  - Genome-wide prediction of imprinted murine genes
    Philippe P. Luedi
    Alexander J. Hartemink
    Randy L. Jirtle
    First Published June 1, 2005
RESOURCES
- - A BAC-based physical map of the Drosophila buzzatii genome
    Josefa González
    Michael Nefedov
    Ian Bosdet
    Ferran Casals
    Oriol Calvete
    Alejandra Delprat Heesun Shin Readman Chiu Carrie Mathewson Natasja Wye
    ...[+5 authors]...,
    Roger A. Hoskins
    Jacqueline E. Schein
    Pieter de Jong
    Alfredo Ruiz
    First Published June 1, 2005
  - AnoEST: Toward A. gambiae functional genomics
    Evgenia V. Kriventseva
    Anastasios C. Koutsos
    Claudia Blass
    Fotis C. Kafatos
    George K. Christophides
    First Published May 17, 2005

Table of Contents

Volume 15, Issue 6 | June 2005

ARTICLES

Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestris

Dichotomous splicing signals in exon flanks

LETTERS

Analysis of 5′ junctions of human LINE-1 and Alu retrotransposons suggests an alternative model for 5′-end attachment requiring microhomology-mediated end-joining

Multilocus patterns of nucleotide variability and the demographic and selection history of Drosophila melanogaster populations

Ultraconserved elements in insect genomes: A highly conserved intronic sequence implicated in the control of homothorax mRNA splicing

Operon formation is driven by co-regulation and not by horizontal gene transfer

Genome-scale analysis of Streptomyces coelicolor A3(2) metabolism

Methods

Direct isolation and identification of promoters in the human genome

Footer: A quantitative comparative genomics method for efficient recognition of cis-regulatory elements

Discovering functional transcription-factor combinations in the human cell cycle

Discovering regulatory binding-site modules using rule-based learning

Identification of genomic features using microsyntenies of domains: Domain teams

Genome-wide prediction of imprinted murine genes

RESOURCES

A BAC-based physical map of the Drosophila buzzatii genome

AnoEST: Toward A. gambiae functional genomics

Table of Contents

Volume 15, Issue 6 | June 2005

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ARTICLES

LETTERS

Methods

RESOURCES