Volume 14, Issue 2 | February 2004

ARTICLES
- - A Motif Co-Occurrence Approach for Genome-Wide Prediction of Transcription-Factor-Binding Sites in Escherichia coli
    Martha L. Bulyk
    Abigail M. McGuire
    Nobuhisa Masuda
    George M. Church
    First Published February 2, 2004
  - Comparative Genomics of Gene Expression in the Parasitic and Free-Living Nematodes Strongyloides stercoralis and Caenorhabditis elegans
    Makedonka Mitreva
    James P. McCarter
    John Martin
    Mike Dante
    Todd Wylie
    Brandi Chiapelli
    ...[+1 authors]...,
    Deana Pape
    Sandra W. Clifton
    Thomas B. Nutman
    Robert H. Waterston
    First Published February 2, 2004
LETTERS
- - The Genome Sequence of Mycoplasma mycoides subsp. mycoides SC Type Strain PG1T, the Causative Agent of Contagious Bovine Pleuropneumonia (CBPP)
    Joakim Westberg
    Anja Persson
    Anders Holmberg
    Alexander Goesmann
    Joakim Lundeberg
    First Published February 2, 2004
  - Expression Profiling and Comparative Genomics Identify a Conserved Regulatory Region Controlling Midline Expression in the Zebrafish Embryo
    Thomas Dickmeis
    Charles Plessy
    Sepand Rastegar
    Pia Aanstad
    Ralf Herwig
    First Published January 12, 2004
  - Closing the Gaps on Human Chromosome 19 Revealed Genes With a High Density of Repetitive Tandemly Arrayed Elements
    Sun-Hee Leem
    Natalay Kouprina
    Jane Grimwood
    Jung-Hyun Kim
    Michael Mullokandov
    Young-Ho Yoon Ji-Youn Chae Jenna Morgan Susan Lucas Paul Richardson Chris Detter
    ...[+6 authors]...,
    Tijana Glavina
    Eddy Rubin
    J. Carl Barrett
    Vladimir Larionov
    First Published January 12, 2004
  - A Comprehensive Analysis of Allelic Methylation Status of CpG Islands on Human Chromosome 21q
    Yoichi Yamada
    Hidemi Watanabe
    Fumihito Miura
    Hidenobu Soejima
    Michiko Uchiyama
    First Published February 2, 2004
  - Evolutionary Strata on the Mouse X Chromosome Correspond to Strata on the Human X Chromosome
    Sara A. Sandstedt
    Priscilla K. Tucker
    First Published February 2, 2004
  - Patterns of Evolutionary Constraints in Intronic and Intergenic DNA of Drosophila
    Daniel L. Halligan
    Adam Eyre-Walker
    Peter Andolfatto
    Peter D. Keightley
    First Published February 2, 2004
  - Mammalian Overlapping Genes: The Comparative Perspective
    Vamsi Veeramachaneni
    Wojciech Makalowski
    Michal Galdzicki
    Raman Sood
    Izabela Makalowska
    First Published February 2, 2004
Methods
- - High-Resolution Analysis of DNA Copy Number Using Oligonucleotide Microarrays
    Graham R. Bignell
    Jing Huang
    Joel Greshock
    Stephen Watt
    Adam Butler
    Sofie West Mira Grigorova Keith W. Jones Wen Wei Michael R. Stratton
    ...[+5 authors]...,
    P. Andrew Futreal
    Barbara Weber
    Michael H. Shapero
    Richard Wooster
    First Published February 2, 2004
  - Digital Detection of Genetic Mutations Using SPC-Sequencing
    Hameer Ruparel
    Michael E. Ulz
    Sobin Kim
    Jingyue Ju
    First Published February 2, 2004
  - Flux Coupling Analysis of Genome-Scale Metabolic Network Reconstructions
    Anthony P. Burgard
    Evgeni V. Nikolaev
    Christophe H. Schilling
    Costas D. Maranas
    First Published January 12, 2004
RESOURCES
- - Analysis of Multiple Genomic Sequence Alignments: A Web Resource, Online Tools, and Lessons Learned From Analysis of Mammalian SCL Loci
    Michael A. Chapman
    Ian J. Donaldson
    James Gilbert
    Darren Grafham
    Jane Rogers
    First Published January 12, 2004
  - A BAC- and BIBAC-Based Physical Map of the Soybean Genome
    Chengcang Wu
    Shuku Sun
    Padmavathi Nimmakayala
    Felipe A. Santos
    Khalid Meksem
    First Published January 12, 2004
ERRATA
- - Correction for Volume 13, p. 2717
    First Published February 2, 2004
  - Correction for Volume 13, p. 1787
    First Published February 2, 2004

Table of Contents

Volume 14, Issue 2 | February 2004

ARTICLES

A Motif Co-Occurrence Approach for Genome-Wide Prediction of Transcription-Factor-Binding Sites in Escherichia coli

Comparative Genomics of Gene Expression in the Parasitic and Free-Living Nematodes Strongyloides stercoralis and Caenorhabditis elegans

LETTERS

The Genome Sequence of Mycoplasma mycoides subsp. mycoides SC Type Strain PG1T, the Causative Agent of Contagious Bovine Pleuropneumonia (CBPP)

Expression Profiling and Comparative Genomics Identify a Conserved Regulatory Region Controlling Midline Expression in the Zebrafish Embryo

Closing the Gaps on Human Chromosome 19 Revealed Genes With a High Density of Repetitive Tandemly Arrayed Elements

A Comprehensive Analysis of Allelic Methylation Status of CpG Islands on Human Chromosome 21q

Evolutionary Strata on the Mouse X Chromosome Correspond to Strata on the Human X Chromosome

Patterns of Evolutionary Constraints in Intronic and Intergenic DNA of Drosophila

Mammalian Overlapping Genes: The Comparative Perspective

Methods

High-Resolution Analysis of DNA Copy Number Using Oligonucleotide Microarrays

Digital Detection of Genetic Mutations Using SPC-Sequencing

Flux Coupling Analysis of Genome-Scale Metabolic Network Reconstructions

RESOURCES

Analysis of Multiple Genomic Sequence Alignments: A Web Resource, Online Tools, and Lessons Learned From Analysis of Mammalian SCL Loci

A BAC- and BIBAC-Based Physical Map of the Soybean Genome

ERRATA

Correction for Volume 13, p. 2717

Correction for Volume 13, p. 1787

Table of Contents

Volume 14, Issue 2 | February 2004

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ARTICLES

LETTERS

Methods

RESOURCES

ERRATA