Volume 14, Issue 1 | January 2004

ARTICLE
- - Developmental Roles of Pufferfish Hox Clusters and Genome Evolution in Ray-Fin Fish
    Angel Amores
    Tohru Suzuki
    Yi-Lin Yan
    Jordan Pomeroy
    Amy Singer
    First Published January 5, 2004
LETTERS
- - Bichir HoxA Cluster Sequence Reveals Surprising Trends in Ray-Finned Fish Genomic Evolution
    Chi-hua Chiu
    Ken Dewar
    Günter P. Wagner
    Kazuhiko Takahashi
    Frank Ruddle
    Christina Ledje Peter Bartsch Jean-Luc Scemama Edmund Stellwag
    ...[+4 authors]...,
    Claudia Fried
    Sonja J. Prohaska
    Peter F. Stadler
    Chris T. Amemiya
    First Published January 5, 2004
  - Mapping and Initial Analysis of Human Subtelomeric Sequence Assemblies
    Harold Riethman
    Anthony Ambrosini
    Carlos Castaneda
    Jeffrey Finklestein
    Xue-Lan Hu
    First Published January 5, 2004
  - Coelomata and Not Ecdysozoa: Evidence From Genome-Wide Phylogenetic Analysis
    Yuri I. Wolf
    Igor B. Rogozin
    Eugene V. Koonin
    First Published January 5, 2004
  - Recombination Has Little Effect on the Rate of Sequence Divergence in Pseudoautosomal Boundary 1 Among Humans and Great Apes
    Soojin Yi
    Tyrone J. Summers
    Nathaniel M. Pearson
    Wen-Hsiung Li
    First Published December 12, 2003
  - Mutational and Selective Pressures on Codon and Amino Acid Usage in Buchnera, Endosymbiotic Bacteria of Aphids
    Claude Rispe
    François Delmotte
    Roeland C.H.J. van Ham
    Andres Moya
    First Published December 12, 2003
  - Elevated Rates of Protein Secretion, Evolution, and Disease Among Tissue-Specific Genes
    Eitan E. Winter
    Leo Goodstadt
    Chris P. Ponting
    First Published January 5, 2004
  - An Abundance of Bidirectional Promoters in the Human Genome
    Nathan D. Trinklein
    Shelley Force Aldred
    Sara J. Hartman
    Diane I. Schroeder
    Robert P. Otillar
    First Published January 5, 2004
  - Ordered Partitioning Reveals Extended Splice-Site Consensus Information
    Michael Weir
    Michael Rice
    First Published January 5, 2004
  - Multiple Variable First Exons: A Mechanism for Cell- and Tissue-Specific Gene Regulation
    Theresa Zhang
    Peter Haws
    Qiang Wu
    First Published December 12, 2003
  - Identification of Antibiotic Stress-Inducible Promoters: A Systematic Approach to Novel Pathway-Specific Reporter Assays for Antibacterial Drug Discovery
    Hans Peter Fischer
    Nina A. Brunner
    Bernd Wieland
    Jesse Paquette
    Ludwig Macko
    First Published January 5, 2004
  - Whole-Genome Discovery of Transcription Factor Binding Sites by Network-Level Conservation
    Moshe Pritsker
    Yir-Chung Liu
    Michael A. Beer
    Saeed Tavazoie
    First Published December 12, 2003
Methods
- - A Cross-Genomic Approach for Systematic Mapping of Phenotypic Traits to Genes
    Kam Jim
    Kush Parmar
    Mona Singh
    Saeed Tavazoie
    First Published January 5, 2004
  - Fluorescent Detection and Isolation of DNA Variants Using Stabilized RecA-Coated Oligonucleotides
    Michael C. Rice
    Brandy M. Heckman
    Yi Liu
    Eric B. Kmiec
    First Published December 12, 2003
  - High-Throughput MALDI-TOF Discovery of Genomic Sequence Polymorphisms
    Patrick Stanssens
    Marc Zabeau
    Geert Meersseman
    Gwen Remes
    Yannick Gansemans
    Niels Storm Ralf Hartmer
    ...[+2 authors]...,
    Christiane Honisch
    Charles P. Rodi
    Sebastian Böcker
    Dirk van den Boom
    First Published January 5, 2004
  - Analysis of Sequence Variations in Several Human Genes Using Phosphoramidite Bond DNA Fragmentation and Chip-Based MALDI-TOF
    Kevin J. Smylie
    Charles R. Cantor
    Mikhail F. Denissenko
    First Published January 5, 2004
  - Computational Gene Prediction Using Multiple Sources of Evidence
    Jonathan E. Allen
    Mihaela Pertea
    Steven L. Salzberg
    First Published January 5, 2004
  - Hierarchical Scaffolding With Bambus
    Mihai Pop
    Daniel S. Kosack
    Steven L. Salzberg
    First Published January 5, 2004
RESOURCES
- - EnsMart: A Generic System for Fast and Flexible Access to Biological Data
    Arek Kasprzyk
    Damian Keefe
    Damian Smedley
    Darin London
    William Spooner
    Craig Melsopp
    ...[+1 authors]...,
    Martin Hammond
    Philippe Rocca-Serra
    Tony Cox
    Ewan Birney
    First Published January 5, 2004
  - CONREAL: Conserved Regulatory Elements Anchored Alignment Algorithm for Identification of Transcription Factor Binding Sites by Phylogenetic Footprinting
    Eugene Berezikov
    Victor Guryev
    Ronald H.A. Plasterk
    Edwin Cuppen
    First Published December 12, 2003
  - 1-Mb Resolution Array-Based Comparative Genomic Hybridization Using a BAC Clone Set Optimized for Cancer Gene Analysis
    Joel Greshock
    Tara L. Naylor
    Adam Margolin
    Sharon Diskin
    Stephen H. Cleaver
    P. Andrew Futreal
    ...[+1 authors]...,
    Pieter J. deJong
    Shaying Zhao
    Michael Liebman
    Barbara L. Weber
    First Published December 12, 2003
  - A Whole-Genome Mouse BAC Microarray With 1-Mb Resolution for Analysis of DNA Copy Number Changes by Array Comparative Genomic Hybridization
    Yeun-Jun Chung
    Jos Jonkers
    Hannah Kitson
    Heike Fiegler
    Sean Humphray
    Carol Scott Sarah Hunt Yuejin Yu Ichiko Nishijima
    ...[+4 authors]...,
    Arno Velds
    Henne Holstege
    Nigel Carter
    Allan Bradley
    First Published January 5, 2004
ERRATUM
- - Correction for Volume 13, p. 2485
    First Published January 5, 2004

Table of Contents

Volume 14, Issue 1 | January 2004

ARTICLE

Developmental Roles of Pufferfish Hox Clusters and Genome Evolution in Ray-Fin Fish

LETTERS

Bichir HoxA Cluster Sequence Reveals Surprising Trends in Ray-Finned Fish Genomic Evolution

Mapping and Initial Analysis of Human Subtelomeric Sequence Assemblies

Coelomata and Not Ecdysozoa: Evidence From Genome-Wide Phylogenetic Analysis

Recombination Has Little Effect on the Rate of Sequence Divergence in Pseudoautosomal Boundary 1 Among Humans and Great Apes

Mutational and Selective Pressures on Codon and Amino Acid Usage in Buchnera, Endosymbiotic Bacteria of Aphids

Elevated Rates of Protein Secretion, Evolution, and Disease Among Tissue-Specific Genes

An Abundance of Bidirectional Promoters in the Human Genome

Ordered Partitioning Reveals Extended Splice-Site Consensus Information

Multiple Variable First Exons: A Mechanism for Cell- and Tissue-Specific Gene Regulation

Identification of Antibiotic Stress-Inducible Promoters: A Systematic Approach to Novel Pathway-Specific Reporter Assays for Antibacterial Drug Discovery

Whole-Genome Discovery of Transcription Factor Binding Sites by Network-Level Conservation

Methods

A Cross-Genomic Approach for Systematic Mapping of Phenotypic Traits to Genes

Fluorescent Detection and Isolation of DNA Variants Using Stabilized RecA-Coated Oligonucleotides

High-Throughput MALDI-TOF Discovery of Genomic Sequence Polymorphisms

Analysis of Sequence Variations in Several Human Genes Using Phosphoramidite Bond DNA Fragmentation and Chip-Based MALDI-TOF

Computational Gene Prediction Using Multiple Sources of Evidence

Hierarchical Scaffolding With Bambus

RESOURCES

EnsMart: A Generic System for Fast and Flexible Access to Biological Data

CONREAL: Conserved Regulatory Elements Anchored Alignment Algorithm for Identification of Transcription Factor Binding Sites by Phylogenetic Footprinting

1-Mb Resolution Array-Based Comparative Genomic Hybridization Using a BAC Clone Set Optimized for Cancer Gene Analysis

A Whole-Genome Mouse BAC Microarray With 1-Mb Resolution for Analysis of DNA Copy Number Changes by Array Comparative Genomic Hybridization

ERRATUM

Correction for Volume 13, p. 2485

Table of Contents

Volume 14, Issue 1 | January 2004

Share this issue

ARTICLE

LETTERS

Methods

RESOURCES

ERRATUM