Table of Contents

ARTICLE

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Developmental Roles of Pufferfish Hox Clusters and Genome Evolution in Ray-Fin Fish
- Angel Amores,
- Tohru Suzuki,
- Yi-Lin Yan,
- Jordan Pomeroy,
- Amy Singer,
- Chris Amemiya,
- and John H. Postlethwait
Genome Res. January 2004 14: 1-10; doi:10.1101/gr.1717804

Methods

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A Cross-Genomic Approach for Systematic Mapping of Phenotypic Traits to Genes
- Kam Jim,
- Kush Parmar,
- Mona Singh,
- and Saeed Tavazoie
Genome Res. January 2004 14: 109-115; doi:10.1101/gr.1586704
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Fluorescent Detection and Isolation of DNA Variants Using Stabilized RecA-Coated Oligonucleotides
- Michael C. Rice,
- Brandy M. Heckman,
- Yi Liu,
- and Eric B. Kmiec
Genome Res. January 2004 14: 116-125; Published in Advance December 12, 2003, doi:10.1101/gr.1386204
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High-Throughput MALDI-TOF Discovery of Genomic Sequence Polymorphisms
- Patrick Stanssens,
- Marc Zabeau,
- Geert Meersseman,
- Gwen Remes,
- Yannick Gansemans,
- Niels Storm,
- Ralf Hartmer,
- Christiane Honisch,
- Charles P. Rodi,
- Sebastian Böcker,
- and Dirk van den Boom
Genome Res. January 2004 14: 126-133; doi:10.1101/gr.1692304
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Analysis of Sequence Variations in Several Human Genes Using Phosphoramidite Bond DNA Fragmentation and Chip-Based MALDI-TOF
- Kevin J. Smylie,
- Charles R. Cantor,
- and Mikhail F. Denissenko
Genome Res. January 2004 14: 134-141; doi:10.1101/gr.1653504
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Computational Gene Prediction Using Multiple Sources of Evidence
- Jonathan E. Allen,
- Mihaela Pertea,
- and Steven L. Salzberg
Genome Res. January 2004 14: 142-148; doi:10.1101/gr.1562804
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Hierarchical Scaffolding With Bambus
- Mihai Pop,
- Daniel S. Kosack,
- and Steven L. Salzberg
Genome Res. January 2004 14: 149-159; doi:10.1101/gr.1536204

RESOURCES

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EnsMart: A Generic System for Fast and Flexible Access to Biological Data
- Arek Kasprzyk,
- Damian Keefe,
- Damian Smedley,
- Darin London,
- William Spooner,
- Craig Melsopp,
- Martin Hammond,
- Philippe Rocca-Serra,
- Tony Cox,
- and Ewan Birney
Genome Res. January 2004 14: 160-169; doi:10.1101/gr.1645104
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CONREAL: Conserved Regulatory Elements Anchored Alignment Algorithm for Identification of Transcription Factor Binding Sites by Phylogenetic Footprinting
- Eugene Berezikov,
- Victor Guryev,
- Ronald H.A. Plasterk,
- and Edwin Cuppen
Genome Res. January 2004 14: 170-178; Published in Advance December 12, 2003, doi:10.1101/gr.1642804
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1-Mb Resolution Array-Based Comparative Genomic Hybridization Using a BAC Clone Set Optimized for Cancer Gene Analysis
- Joel Greshock,
- Tara L. Naylor,
- Adam Margolin,
- Sharon Diskin,
- Stephen H. Cleaver,
- P. Andrew Futreal,
- Pieter J. deJong,
- Shaying Zhao,
- Michael Liebman,
- and Barbara L. Weber
Genome Res. January 2004 14: 179-187; Published in Advance December 12, 2003, doi:10.1101/gr.1847304
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A Whole-Genome Mouse BAC Microarray With 1-Mb Resolution for Analysis of DNA Copy Number Changes by Array Comparative Genomic Hybridization
- Yeun-Jun Chung,
- Jos Jonkers,
- Hannah Kitson,
- Heike Fiegler,
- Sean Humphray,
- Carol Scott,
- Sarah Hunt,
- Yuejin Yu,
- Ichiko Nishijima,
- Arno Velds,
- Henne Holstege,
- Nigel Carter,
- and Allan Bradley
Genome Res. January 2004 14: 188-196; doi:10.1101/gr.1878804

ERRATUM

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Correction for Volume 13, p. 2485
Genome Res. January 2004 14: 197

ARTICLE

Developmental Roles of Pufferfish Hox Clusters and Genome Evolution in Ray-Fin Fish

LETTERS

Bichir HoxA Cluster Sequence Reveals Surprising Trends in Ray-Finned Fish Genomic Evolution

Mapping and Initial Analysis of Human Subtelomeric Sequence Assemblies

Coelomata and Not Ecdysozoa: Evidence From Genome-Wide Phylogenetic Analysis

Recombination Has Little Effect on the Rate of Sequence Divergence in Pseudoautosomal Boundary 1 Among Humans and Great Apes

Mutational and Selective Pressures on Codon and Amino Acid Usage in Buchnera, Endosymbiotic Bacteria of Aphids

Elevated Rates of Protein Secretion, Evolution, and Disease Among Tissue-Specific Genes

An Abundance of Bidirectional Promoters in the Human Genome

Ordered Partitioning Reveals Extended Splice-Site Consensus Information

Multiple Variable First Exons: A Mechanism for Cell- and Tissue-Specific Gene Regulation

Identification of Antibiotic Stress-Inducible Promoters: A Systematic Approach to Novel Pathway-Specific Reporter Assays for Antibacterial Drug Discovery

Whole-Genome Discovery of Transcription Factor Binding Sites by Network-Level Conservation

Methods

A Cross-Genomic Approach for Systematic Mapping of Phenotypic Traits to Genes

Fluorescent Detection and Isolation of DNA Variants Using Stabilized RecA-Coated Oligonucleotides

High-Throughput MALDI-TOF Discovery of Genomic Sequence Polymorphisms

Analysis of Sequence Variations in Several Human Genes Using Phosphoramidite Bond DNA Fragmentation and Chip-Based MALDI-TOF

Computational Gene Prediction Using Multiple Sources of Evidence

Hierarchical Scaffolding With Bambus

RESOURCES

EnsMart: A Generic System for Fast and Flexible Access to Biological Data

CONREAL: Conserved Regulatory Elements Anchored Alignment Algorithm for Identification of Transcription Factor Binding Sites by Phylogenetic Footprinting

1-Mb Resolution Array-Based Comparative Genomic Hybridization Using a BAC Clone Set Optimized for Cancer Gene Analysis

A Whole-Genome Mouse BAC Microarray With 1-Mb Resolution for Analysis of DNA Copy Number Changes by Array Comparative Genomic Hybridization

ERRATUM

Correction for Volume 13, p. 2485

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