Table of Contents

February 2004; 14 (2)

ARTICLES

  • A Motif Co-Occurrence Approach for Genome-Wide Prediction of Transcription-Factor-Binding Sites in Escherichia coli

    • Martha L. Bulyk,
    • Abigail M. McGuire,
    • Nobuhisa Masuda,
    • and George M. Church
    Genome Res. February 2004 14: 201-208; doi:10.1101/gr.1448004

  • Comparative Genomics of Gene Expression in the Parasitic and Free-Living Nematodes Strongyloides stercoralis and Caenorhabditis elegans

    • Makedonka Mitreva,
    • James P. McCarter,
    • John Martin,
    • Mike Dante,
    • Todd Wylie,
    • Brandi Chiapelli,
    • Deana Pape,
    • Sandra W. Clifton,
    • Thomas B. Nutman,
    • and Robert H. Waterston
    Genome Res. February 2004 14: 209-220; doi:10.1101/gr.1524804

LETTERS

  • The Genome Sequence of Mycoplasma mycoides subsp. mycoides SC Type Strain PG1T, the Causative Agent of Contagious Bovine Pleuropneumonia (CBPP)

    • Joakim Westberg,
    • Anja Persson,
    • Anders Holmberg,
    • Alexander Goesmann,
    • Joakim Lundeberg,
    • Karl-Erik Johansson,
    • Bertil Pettersson,
    • and Mathias Uhlén
    Genome Res. February 2004 14: 221-227; doi:10.1101/gr.1673304

  • Expression Profiling and Comparative Genomics Identify a Conserved Regulatory Region Controlling Midline Expression in the Zebrafish Embryo

    • Thomas Dickmeis,
    • Charles Plessy,
    • Sepand Rastegar,
    • Pia Aanstad,
    • Ralf Herwig,
    • Frédéric Chalmel,
    • Nadine Fischer,
    • and Uwe Strähle
    Genome Res. February 2004 14: 228-238; Published in Advance January 12, 2004, doi:10.1101/gr.1819204

  • Closing the Gaps on Human Chromosome 19 Revealed Genes With a High Density of Repetitive Tandemly Arrayed Elements

    • Sun-Hee Leem,
    • Natalay Kouprina,
    • Jane Grimwood,
    • Jung-Hyun Kim,
    • Michael Mullokandov,
    • Young-Ho Yoon,
    • Ji-Youn Chae,
    • Jenna Morgan,
    • Susan Lucas,
    • Paul Richardson,
    • Chris Detter,
    • Tijana Glavina,
    • Eddy Rubin,
    • J. Carl Barrett,
    • and Vladimir Larionov
    Genome Res. February 2004 14: 239-246; Published in Advance January 12, 2004, doi:10.1101/gr.1929904

  • A Comprehensive Analysis of Allelic Methylation Status of CpG Islands on Human Chromosome 21q

    • Yoichi Yamada,
    • Hidemi Watanabe,
    • Fumihito Miura,
    • Hidenobu Soejima,
    • Michiko Uchiyama,
    • Tsuyoshi Iwasaka,
    • Tsunehiro Mukai,
    • Yoshiyuki Sakaki,
    • and Takashi Ito
    Genome Res. February 2004 14: 247-266; doi:10.1101/gr.1351604

  • Evolutionary Strata on the Mouse X Chromosome Correspond to Strata on the Human X Chromosome

    • Sara A. Sandstedt and
    • Priscilla K. Tucker
    Genome Res. February 2004 14: 267-272; doi:10.1101/gr.1796204

  • Patterns of Evolutionary Constraints in Intronic and Intergenic DNA of Drosophila

    • Daniel L. Halligan,
    • Adam Eyre-Walker,
    • Peter Andolfatto,
    • and Peter D. Keightley
    Genome Res. February 2004 14: 273-279; doi:10.1101/gr.1329204

  • Mammalian Overlapping Genes: The Comparative Perspective

    • Vamsi Veeramachaneni,
    • Wojciech Makalowski,
    • Michal Galdzicki,
    • Raman Sood,
    • and Izabela Makalowska
    Genome Res. February 2004 14: 280-286; doi:10.1101/gr.1590904

Methods

  • High-Resolution Analysis of DNA Copy Number Using Oligonucleotide Microarrays

    • Graham R. Bignell,
    • Jing Huang,
    • Joel Greshock,
    • Stephen Watt,
    • Adam Butler,
    • Sofie West,
    • Mira Grigorova,
    • Keith W. Jones,
    • Wen Wei,
    • Michael R. Stratton,
    • P. Andrew Futreal,
    • Barbara Weber,
    • Michael H. Shapero,
    • and Richard Wooster
    Genome Res. February 2004 14: 287-295; doi:10.1101/gr.2012304

  • Digital Detection of Genetic Mutations Using SPC-Sequencing

    • Hameer Ruparel,
    • Michael E. Ulz,
    • Sobin Kim,
    • and Jingyue Ju
    Genome Res. February 2004 14: 296-300; doi:10.1101/gr.1344104

  • Flux Coupling Analysis of Genome-Scale Metabolic Network Reconstructions

    • Anthony P. Burgard,
    • Evgeni V. Nikolaev,
    • Christophe H. Schilling,
    • and Costas D. Maranas
    Genome Res. February 2004 14: 301-312; Published in Advance January 12, 2004, doi:10.1101/gr.1926504

RESOURCES

  • Analysis of Multiple Genomic Sequence Alignments: A Web Resource, Online Tools, and Lessons Learned From Analysis of Mammalian SCL Loci

    • Michael A. Chapman,
    • Ian J. Donaldson,
    • James Gilbert,
    • Darren Grafham,
    • Jane Rogers,
    • Anthony R. Green,
    • and Berthold Göttgens
    Genome Res. February 2004 14: 313-318; Published in Advance January 12, 2004, doi:10.1101/gr.1759004

  • A BAC- and BIBAC-Based Physical Map of the Soybean Genome

    • Chengcang Wu,
    • Shuku Sun,
    • Padmavathi Nimmakayala,
    • Felipe A. Santos,
    • Khalid Meksem,
    • Rachael Springman,
    • Kejiao Ding,
    • David A. Lightfoot,
    • and Hong-Bin Zhang
    Genome Res. February 2004 14: 319-326; Published in Advance January 12, 2004, doi:10.1101/gr.1405004

ERRATA

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This Issue

February 2004; 14 (2)
Cover
  1. ARTICLES
  2. LETTERS
  3. Methods
  4. RESOURCES
  5. ERRATA

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