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Table of Contents
December 2003; 13 (12)
ARTICLES
Select this article
Identification and Characterization of Multi-Species Conserved Sequences
Elliott H. Margulies
,
Mathieu Blanchette
,
NISC Comparative Sequencing Program
,
David Haussler
,
and
Eric D. Green
Genome Res.
December 2003
13
:
2507
-
2518
;
doi:
10.1101/gr.1602203
Abstract
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Shuffling of Genes Within Low-Copy Repeats on 22q11 (LCR22) by
Alu
-Mediated Recombination Events During Evolution
Melanie Babcock
,
Adam Pavlicek
,
Elizabeth Spiteri
,
Catherine D. Kashork
,
Ilya Ioshikhes
,
Lisa G. Shaffer
,
Jerzy Jurka
,
and
Bernice E. Morrow
Genome Res.
December 2003
13
:
2519
-
2532
;
doi:
10.1101/gr.1549503
Abstract
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Supplemental Research Data
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Does Recombination Shape the Distribution and Evolution of Tandemly Arrayed Genes (TAGs) in the
Arabidopsis thaliana
Genome?
Liqing Zhang
and
Brandon S. Gaut
Genome Res.
December 2003
13
:
2533
-
2540
;
doi:
10.1101/gr.1318503
Abstract
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LETTERS
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Millions of Years of Evolution Preserved: A Comprehensive Catalog of the Processed Pseudogenes in the Human Genome
Zhaolei Zhang
,
Paul M. Harrison
,
Yin Liu
,
and
Mark Gerstein
Genome Res.
December 2003
13
:
2541
-
2558
;
doi:
10.1101/gr.1429003
Abstract
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A Genome-Wide Survey of Human Pseudogenes
David Torrents
,
Mikita Suyama
,
Evgeny Zdobnov
,
and
Peer Bork
Genome Res.
December 2003
13
:
2559
-
2567
;
doi:
10.1101/gr.1455503
Abstract
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From Gene Networks to Gene Function
Thomas Schlitt
,
Kimmo Palin
,
Johan Rung
,
Sabine Dietmann
,
Michael Lappe
,
Esko Ukkonen
,
and
Alvis Brazma
Genome Res.
December 2003
13
:
2568
-
2576
;
doi:
10.1101/gr.1111403
Abstract
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Supplemental Research Data
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Comparative Genome Analysis of
Vibrio vulnificus
, a Marine Pathogen
Chung-Yung Chen
,
Keh-Ming Wu
,
Yo-Cheng Chang
,
Chuan-Hsiung Chang
,
Hui-Chi Tsai
,
Tsai-Lien Liao
,
Yen-Ming Liu
,
Hsiang-Ju Chen
,
Arthur Bo-Ting Shen
,
Jian-Chiuan Li
,
Teh-Li Su
,
Chung-Ping Shao
,
Chung-Te Lee
,
Lien-I Hor
,
and
Shih-Feng Tsai
Genome Res.
December 2003
13
:
2577
-
2587
;
doi:
10.1101/gr.1295503
Abstract
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Supplemental Research Data
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Genomic Analysis in the
sting-2
Quantitative Trait Locus for Defensive Behavior in the Honey Bee,
Apis mellifera
Neil F. Lobo
,
Lucas Q. Ton
,
Catherine A. Hill
,
Christine Emore
,
Jeanne Romero-Severson
,
Greg J. Hunt
,
and
Frank H. Collins
Genome Res.
December 2003
13
:
2588
-
2593
;
doi:
10.1101/gr.1634503
Abstract
Full Text
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Nucleotide Frequency Variation Across Human Genes
Elizabeth Louie
,
Jurg Ott
,
and
Jacek Majewski
Genome Res.
December 2003
13
:
2594
-
2601
;
Published in Advance
January 1, 2003
,
doi:
10.1101/gr.1317703
Abstract
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Gene Length and Proximity to Neighbors Affect Genome-Wide Expression Levels
Francesca Chiaromonte
,
Webb Miller
,
and
Eric E. Bouhassira,
Genome Res.
December 2003
13
:
2602
-
2608
;
Published in Advance
January 1, 2003
,
doi:
10.1101/gr.1169203
Abstract
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Characterizing Embryonic Gene Expression Patterns in the Mouse Using Nonredundant Sequence-Based Selection
Rita Sousa-Nunes
,
Amer Ahmed Rana
,
Ross Kettleborough
,
Joshua M. Brickman
,
Melanie Clements
,
Alistair Forrest
,
Sean Grimmond
,
Philip Avner
,
James C. Smith
,
Sally L. Dunwoodie
,
and
Rosa S.P. Beddington
Genome Res.
December 2003
13
:
2609
-
2620
;
Published in Advance
January 1, 2003
,
doi:
10.1101/gr.1362303
Abstract
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Analysis of the Gene-Dense Major Histocompatibility Complex Class III Region and Its Comparison to Mouse
Tao Xie
,
Lee Rowen
,
Begoña Aguado
,
Mary Ellen Ahearn
,
Anup Madan
,
Shizhen Qin
,
R. Duncan Campbell
,
and
Leroy Hood
Genome Res.
December 2003
13
:
2621
-
2636
;
doi:
10.1101/gr.1736803
Abstract
Full Text
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Supplemental Research Data
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Sequence Information for the Splicing of Human Pre-mRNA Identified by Support Vector Machine Classification
Xiang H-F. Zhang
,
Katherine A. Heller
,
Ilana Hefter
,
Christina S. Leslie
,
and
Lawrence A. Chasin
Genome Res.
December 2003
13
:
2637
-
2650
;
doi:
10.1101/gr.1679003
Abstract
Full Text
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Molecular Correlates of Genes Exhibiting RNAi Phenotypes in
Caenorhabditis elegans
Asher D. Cutter
,
Bret A. Payseur
,
Tovah Salcedo
,
Anne M. Estes
,
Jeffrey M. Good
,
Elizabeth Wood
,
Thomas Hartl
,
Heather Maughan
,
Jannine Strempel
,
Baomin Wang
,
Anthony C. Bryan
,
and
Melissa Dellos
Genome Res.
December 2003
13
:
2651
-
2657
;
doi:
10.1101/gr.1659203
Abstract
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Genes and Transposons Are Differentially Methylated in Plants, but Not in Mammals
Pablo D. Rabinowicz
,
Lance E. Palmer
,
Bruce P. May
,
Michael T. Hemann
,
Scott W. Lowe
,
W. Richard McCombie
,
and
Robert A. Martienssen
Genome Res.
December 2003
13
:
2658
-
2664
;
doi:
10.1101/gr.1784803
Abstract
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Hierarchy of Sequence-Dependent Features Associated With Prokaryotic Translation
Gila Lithwick
and
Hanah Margalit
Genome Res.
December 2003
13
:
2665
-
2673
;
doi:
10.1101/gr.1485203
Abstract
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The Clustered Olfactory Receptor Gene Family 262: Genomic Organization, Promotor Elements, and Interacting Transcription Factors
Reiner Hoppe
,
Henning Frank
,
Heinz Breer
,
and
Jörg Strotmann
Genome Res.
December 2003
13
:
2674
-
2685
;
doi:
10.1101/gr.1372203
Abstract
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Correlations Between Gene Expression and Gene Conservation in Fission Yeast
Juan Mata
and
Jürg Bähler
Genome Res.
December 2003
13
:
2686
-
2690
;
Published in Advance
January 1, 2003
,
doi:
10.1101/gr.1420903
Abstract
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Methods
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A Strategy for Constructing Large Protein Interaction Maps Using the Yeast Two-Hybrid System:Regulated Expression Arrays and Two-Phase Mating
Jinhui Zhong
,
Huamei Zhang
,
Clement A. Stanyon
,
Gerard Tromp
,
and
Russell L. Finley, Jr.
Genome Res.
December 2003
13
:
2691
-
2699
;
Published in Advance
January 1, 2003
,
doi:
10.1101/gr.1134603
Abstract
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Efficient Target-Selected Mutagenesis in Zebrafish
Erno Wienholds
,
Freek van Eeden
,
Marit Kosters
,
Josine Mudde
,
Ronald H.A. Plasterk
,
and
Edwin Cuppen
Genome Res.
December 2003
13
:
2700
-
2707
;
Published in Advance
January 1, 2003
,
doi:
10.1101/gr.1725103
Abstract
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Toward a Functional Annotation of the Human Genome Using Artificial Transcription Factors
Dong-ki Lee
,
Jin Woo Park
,
Youn-Jae Kim
,
Jiwon Kim
,
Yangsoon Lee
,
Jeonglim Kim
,
and
Jin-Soo Kim
Genome Res.
December 2003
13
:
2708
-
2716
;
doi:
10.1101/gr.1397903
Abstract
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Clone-Based Systematic Haplotyping (CSH): A Procedure for Physical Haplotyping of Whole Genomes
Carola Burgtorf
,
Pamela Kepper
,
Margret Hoehe
,
Carsten Schmitt
,
Richard Reinhardt
,
Hans Lehrach
,
and
Sascha Sauer
Genome Res.
December 2003
13
:
2717
-
2724
;
doi:
10.1101/gr.1442303
Abstract
Full Text
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Supplemental Research Data
RESOURCES
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Analysis and Functional Annotation of an Expressed Sequence Tag Collection for Tropical Crop Sugarcane
André L. Vettore
,
Felipe R. da Silva
,
Edson L. Kemper
,
Glaucia M. Souza
,
Aline M. da Silva
,
Maria Inês T. Ferro
,
Flavio Henrique-Silva
,
Éder A. Giglioti
,
Manoel V.F. Lemos
,
Luiz L. Coutinho
,
Marina P. Nobrega
,
Helaine Carrer
,
Suzelei C. França
,
Maurício Bacci, Jr.
,
Maria Helena S. Goldman
,
Suely L. Gomes
,
Luiz R. Nunes
,
Luis E.A. Camargo
,
Walter J. Siqueira
,
Marie-Anne Van Sluys
,
Otavio H. Thiemann
,
Eiko E. Kuramae
,
Roberto V. Santelli
,
Celso L. Marino
,
Maria L.P.N. Targon
,
Jesus A. Ferro
,
Henrique C.S. Silveira
,
Danyelle C. Marini
,
Eliana G.M. Lemos
,
Claudia B. Monteiro-Vitorello
,
José H.M. Tambor
,
Dirce M. Carraro
,
Patrícia G. Roberto
,
Vanderlei G. Martins
,
Gustavo H. Goldman
,
Regina C. de Oliveira
,
Daniela Truffi
,
Carlos A. Colombo
,
Magdalena Rossi
,
Paula G. de Araujo
,
Susana A. Sculaccio
,
Aline Angella
,
Marleide M.A. Lima
,
Vicente E. de Rosa, Jr
,
Fábio Siviero
,
Virginia E. Coscrato
,
Marcos A. Machado
,
Laurent Grivet
,
Sonia M.Z. Di Mauro
,
Francisco G. Nobrega
,
Carlos F.M. Menck
,
Marilia D.V. Braga
,
Guilherme P. Telles
,
Frank A.A. Cara
,
Guilherme Pedrosa
,
João Meidanis
,
and
Paulo Arruda
Genome Res.
December 2003
13
:
2725
-
2735
;
Published in Advance
January 1, 2003
,
doi:
10.1101/gr.1532103
Abstract
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Generation, Annotation, Evolutionary Analysis, and Database Integration of 20,000 Unique Sea Urchin EST Clusters
Albert J. Poustka
,
Detlef Groth
,
Steffen Hennig
,
Sabine Thamm
,
Andrew Cameron
,
Alfred Beck
,
Richard Reinhardt
,
Ralf Herwig
,
Georgia Panopoulou
,
and
Hans Lehrach
Genome Res.
December 2003
13
:
2736
-
2746
;
doi:
10.1101/gr.1674103
Abstract
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Supplemental Research Data
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Fugu
ESTs: New Resources for Transcription Analysis and Genome Annotation
Melody S. Clark
,
Yvonne J.K. Edwards
,
Dan Peterson
,
Sandra W. Clifton
,
Amanda J. Thompson
,
Masahide Sasaki
,
Yutaka Suzuki
,
Kiyoshi Kikuchi
,
Shugo Watabe
,
Koichi Kawakami
,
Sumio Sugano
,
Greg Elgar
,
and
Stephen L. Johnson
Genome Res.
December 2003
13
:
2747
-
2753
;
Published in Advance
January 1, 2003
,
doi:
10.1101/gr.1691503
Abstract
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A BAC-Based Physical Map of the Chicken Genome
Chengwei Ren
,
Mi-Kyung Lee
,
Bo Yan
,
Kejiao Ding
,
Bettye Cox
,
Michael N. Romanov
,
Jennifer A. Price
,
Jerry B. Dodgson
,
and
Hong-Bin Zhang
Genome Res.
December 2003
13
:
2754
-
2758
;
doi:
10.1101/gr.1499303
Abstract
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ERRATA
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Correction for Volume 13, p. 2265
Genome Res.
December 2003
13
:
2759
Extract
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Correction for Volume 13, p. 1944
Genome Res.
December 2003
13
:
2759
Extract
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December 2003;
13
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