Table of Contents

September 2001; 11 (9)

INSIGHT/OUTLOOK

  • Assembling Puzzles from Preassembled Blocks

    • Pavel A. Pevzner
    Genome Res. September 1, 2001 11: 1461-1462; doi:10.1101/gr.206301

  • Interrelating Different Types of Genomic Data, from Proteome to Secretome: 'Oming in on Function

    • Dov Greenbaum,
    • Nicholas M. Luscombe,
    • Ronald Jansen,
    • Jiang Qian,
    • and Mark Gerstein
    Genome Res. September 1, 2001 11: 1463-1468; doi:10.1101/gr.207401

  • Looking at Old Tools in New Ways: Using Knockouts as Congenics to Study QTLs

    • Jeremy Peirce
    Genome Res. September 1, 2001 11: 1469-1471; doi:10.1101/gr.206201

ARTICLES

  • A Novel Method of Gene Transcript Profiling in Airway Biopsy Homogenates Reveals Increased Expression of a Na+-K+-Cl− Cotransporter (NKCC1) in Asthmatic Subjects

    • Gregory M. Dolganov,
    • Prescott G. Woodruff,
    • Alexander A. Novikov,
    • Yifan Zhang,
    • Ronald E. Ferrando,
    • Richard Szubin,
    • and John V. Fahy
    Genome Res. September 1, 2001 11: 1473-1483; Published in Advance August 16, 2001, doi:10.1101/gr.191301

  • A Proteomic View on Genome-Based Signal Peptide Predictions

    • Haike Antelmann,
    • Harold Tjalsma,
    • Birgit Voigt,
    • Steffen Ohlmeier,
    • Sierd Bron,
    • Jan Maarten van Dijl,
    • and Michael Hecker
    Genome Res. September 1, 2001 11: 1484-1502; doi:10.1101/gr.182801

LETTERS

  • Functional Versatility and Molecular Diversity of the Metabolic Map of Escherichia coli

    • Sophia Tsoka and
    • Christos A. Ouzounis
    Genome Res. September 1, 2001 11: 1503-1510; Published in Advance August 16, 2001, doi:10.1101/gr.187501

  • A Novel γ2-Herpesvirus of the Rhadinovirus 2 Lineage in Chimpanzees

    • Vincent Lacoste,
    • Philippe Mauclère,
    • Guy Dubreuil,
    • John Lewis,
    • Marie-Claude Georges-Courbot,
    • and Antoine Gessain
    Genome Res. September 1, 2001 11: 1511-1519; doi:10.1101/gr.158601

  • Identification of Alternate Polyadenylation Sites and Analysis of their Tissue Distribution Using EST Data

    • Emmanuel Beaudoing and
    • Daniel Gautheret
    Genome Res. September 1, 2001 11: 1520-1526; Published in Advance August 16, 2001, doi:10.1101/gr.190501

  • Drosophila Euchromatic LTR Retrotransposons are Much Younger Than the Host Species in Which They Reside

    • Nathan J. Bowen and
    • John F. McDonald
    Genome Res. September 1, 2001 11: 1527-1540; Published in Advance August 16, 2001, doi:10.1101/gr.164201

METHODS

  • Assembly of the Working Draft of the Human Genome with GigAssembler

    • W. James Kent and
    • David Haussler
    Genome Res. September 1, 2001 11: 1541-1548; Published in Advance August 16, 2001, doi:10.1101/gr.183201

  • Mapping of Quantitative Trait Loci with Knockout/Congenic Strains

    • Valerie J. Bolivar,
    • Melloni N. Cook,
    • and Lorraine Flaherty
    Genome Res. September 1, 2001 11: 1549-1552; doi:10.1101/gr.194001

  • Construction of Long-Transcript Enriched cDNA Libraries from Submicrogram Amounts of Total RNAs by a Universal PCR Amplification Method

    • Yulan Piao,
    • Naomi T. Ko,
    • Meng K. Lim,
    • and Minoru S.H. Ko
    Genome Res. September 1, 2001 11: 1553-1558; doi:10.1101/gr.185501

  • A Predictive Model for Regulatory Sequences Directing Liver-Specific Transcription

    • William Krivan and
    • Wyeth W. Wasserman
    Genome Res. September 1, 2001 11: 1559-1566; Published in Advance August 16, 2001, doi:10.1101/gr.180601

  • cis Element/Transcription Factor Analysis (cis/TF): A Method for Discovering Transcription Factor/cis Element Relationships

    • Kenneth Birnbaum,
    • Philip N. Benfey,
    • and Dennis E. Shasha
    Genome Res. September 1, 2001 11: 1567-1573; Published in Advance August 16, 2001, doi:10.1101/gr.158301

  • SGP-1: Prediction and Validation of Homologous Genes Based on Sequence Alignments

    • Thomas Wiehe,
    • Steffi Gebauer-Jung,
    • Thomas Mitchell-Olds,
    • and Roderic Guigó
    Genome Res. September 1, 2001 11: 1574-1583; doi:10.1101/gr.177401

  • Shotgun Optical Maps of the Whole Escherichia coli O157:H7 Genome

    • Alex Lim,
    • Eileen T. Dimalanta,
    • Konstantinos D. Potamousis,
    • Galex Yen,
    • Jennifer Apodoca,
    • Chunhong Tao,
    • Jieyi Lin,
    • Rong Qi,
    • John Skiadas,
    • Arvind Ramanathan,
    • Nicole T. Perna,
    • Guy Plunkett III,
    • Valerie Burland,
    • Bob Mau,
    • Jeremiah Hackett,
    • Frederick R. Blattner,
    • Thomas S. Anantharaman,
    • Bhubaneswar Mishra,
    • and David C. Schwartz
    Genome Res. September 1, 2001 11: 1584-1593; Published in Advance August 16, 2001, doi:10.1101/gr.172101

RESOURCES

  • An Oligonucleotide Fingerprint Normalized and Expressed Sequence Tag Characterized Zebrafish cDNA Library

    • Matthew D. Clark,
    • Steffen Hennig,
    • Ralf Herwig,
    • Sandy W. Clifton,
    • Marco A. Marra,
    • Hans Lehrach,
    • Stephen L. Johnson,
    • and the WU-GSC EST Group
    Genome Res. September 1, 2001 11: 1594-1602; Published in Advance August 16, 2001, doi:10.1101/gr.186901

  • Argus—A New Database System for Web-Based Analysis of Multiple Microarray Data Sets

    • Jason Comander,
    • Griffin M. Weber,
    • Michael A. Gimbrone, Jr.,
    • and Guillermo García-Cardeña
    Genome Res. September 1, 2001 11: 1603-1610; doi:10.1101/gr.186601
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This Issue

September 2001; 11 (9)
Cover
  1. INSIGHT/OUTLOOK
  2. ARTICLES
  3. LETTERS
  4. METHODS
  5. RESOURCES

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