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Research

Cell cycle arrest explains the observed bulk 3D genomic alterations in response to long-term heat shock in K562 cells

  • First Published July 14, 2022
Method

Haplotype and population structure inference using neural networks in whole-genome sequencing data

  • First Published July 6, 2022
Method

Highly accurate quantification of allelic gene expression for population and disease genetics

  • First Published July 6, 2022
Method

An efficient method to identify, date, and describe admixture events using haplotype information

  • First Published July 6, 2022
RECOMB 2022 Special/Methods

Unsupervised cell functional annotation for single-cell RNA-seq

  • First Published June 28, 2022
Research

High temporal resolution RNA-seq time course data reveals widespread synchronous activation between mammalian lncRNAs and neighboring protein-coding genes

  • First Published June 27, 2022
Resource

KCNQ4" > Proactive functional classification of all possible missense single-nucleotide variants in KCNQ4

  • First Published June 27, 2022
Corrigendum

Corrigendum: Enhancer–silencer transitions in the human genome

  • First Published June 24, 2022
Corrigendum

Corrigendum: NicE-C efficiently reveals open chromatin–associated chromosome interactions at high resolution

  • First Published June 24, 2022
Corrigendum

Corrigendum: An association test of the spatial distribution of rare missense variants within protein structures identifies Alzheimer's disease–related patterns

  • First Published June 24, 2022
RECOMB 2022 Special/Methods

Ultra-high-diversity factorizable libraries for efficient therapeutic discovery

  • First Published June 23, 2022
Research

Genomic analysis of Rad26 and Rad1–Rad10 reveals differences in their dependence on Mediator and RNA polymerase II

  • First Published June 23, 2022
Research

Somatic retrotransposition in the developing rhesus macaque brain

  • First Published June 21, 2022
Research

HDAC9 structural variants disrupting TWIST1 transcriptional regulation lead to craniofacial and limb malformations" > HDAC9 structural variants disrupting TWIST1 transcriptional regulation lead to craniofacial and limb malformations

  • First Published June 16, 2022
Method

Dynamic regulatory module networks for inference of cell type–specific transcriptional networks

  • First Published June 15, 2022
Research

Extensive protein dosage compensation in aneuploid human cancers

  • First Published June 14, 2022
Method

Polishing copy number variant calls on exome sequencing data via deep learning

  • First Published June 13, 2022
Research

Diurnal and eating-associated microbial patterns revealed via high-frequency saliva sampling

  • First Published June 10, 2022
Resource

Precision environmental health monitoring by longitudinal exposome and multi-omics profiling

  • First Published June 6, 2022
Research

Snake venom gene expression is coordinated by novel regulatory architecture and the integration of multiple co-opted vertebrate pathways

  • First Published June 1, 2022
Research

Frequent somatic gene conversion as a mechanism for loss of heterozygosity in tumor suppressor genes

  • First Published May 26, 2022
Research

Evolution of transcription factor binding through sequence variations and turnover of binding sites

  • First Published May 26, 2022
Resource

Native RNA sequencing in fission yeast reveals frequent alternative splicing isoforms

  • First Published May 26, 2022
Method

Profiling the quantitative occupancy of myriad transcription factors across conditions by modeling chromatin accessibility data

  • First Published May 24, 2022
Research

TP53-inducible putative long noncoding RNAs encode functional polypeptides that suppress cell proliferation

  • First Published May 24, 2022
RECOMB 2022 Special/Methods

Lossless indexing with counting de Bruijn graphs

  • First Published May 24, 2022
Research

Rtt109 promotes nucleosome replacement ahead of the replication fork

  • First Published May 24, 2022
Corrigendum

Corrigendum: Low-input RNase footprinting for simultaneous quantification of cytosolic and mitochondrial translation

  • First Published May 11, 2022
Method

Automated annotation of human centromeres with HORmon

  • First Published May 11, 2022
Research

Rapid evolution and strain turnover in the infant gut microbiome

  • First Published May 11, 2022
Method

Gene prediction in the immunoglobulin loci

  • First Published May 11, 2022
Method

Early embryonic mutations reveal dynamics of somatic and germ cell lineages in mice

  • First Published May 9, 2022
Research

Drosophila" > Transposable element accumulation drives size differences among polymorphic Y Chromosomes in Drosophila

  • First Published May 2, 2022
Research

Genetic, epigenetic, and environmental mechanisms govern allele-specific gene expression

  • First Published May 2, 2022
Research

E. coli measured at single-base resolution" > Genome-wide promoter assembly in E. coli measured at single-base resolution

  • First Published April 28, 2022
Method

A complete pedigree-based graph workflow for rare candidate variant analysis

  • First Published April 28, 2022
Research

Relative contributions of sex hormones, sex chromosomes, and gonads to sex differences in tissue gene regulation

  • First Published April 8, 2022
Research

Long-read sequencing of 111 rice genomes reveals significantly larger pan-genomes

  • First Published April 8, 2022
Research

H3K36 dimethylation shapes the epigenetic interaction landscape by directing repressive chromatin modifications in embryonic stem cells

  • First Published April 8, 2022
Method

Chromatin interaction–aware gene regulatory modeling with graph attention networks

  • First Published April 8, 2022
Method

Variations in antibody repertoires correlate with vaccine responses

  • First Published March 31, 2022
Research

Saccharomyces cerevisiae in Taiwan reveals ecology and evolution of predomesticated lineages" > Extensive sampling of Saccharomyces cerevisiae in Taiwan reveals ecology and evolution of predomesticated lineages

  • First Published March 31, 2022
Perspective

Short arms of human acrocentric chromosomes and the completion of the human genome sequence

  • First Published March 31, 2022
Commentary

Implications of the first complete human genome assembly

  • First Published March 31, 2022
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