Your search for returned 6,370 results
Method
Fast and accurate mapping of long reads to complete genome assemblies with VerityMap
- First Published November 15, 2022
Research
Caenorhabditis nematode" > Genetic exchange with an outcrossing sister species causes severe genome-wide dysregulation in a selfing Caenorhabditis nematode
- First Published November 9, 2022
Method
Sequencing Illumina libraries at high accuracy on the ONT MinION using R2C2
- First Published November 9, 2022
Research
Caenorhabditis elegans" > Systematic transcriptome analysis associated with physiological and chronological aging in Caenorhabditis elegans
- First Published November 9, 2022
Research
Non-Mendelian inheritance patterns and extreme deviation rates of CGG repeats in autism
- First Published November 9, 2022
Research
Hybridization drives mitochondrial DNA degeneration and metabolic shift in a species with biparental mitochondrial inheritance
- First Published November 9, 2022
Method
Methyl-SNP-seq reveals dual readouts of methylome and variome at molecule resolution while enabling target enrichment
- First Published November 4, 2022
Corrigendum
Corrigendum: Cell cycle arrest explains the observed bulk 3D genomic alterations in response to long-term heat shock in K562 cells
- First Published November 2, 2022
Corrigendum
Corrigendum: Diversifying the genomic data science research community
- First Published November 2, 2022
Research
Diverse environmental perturbations reveal the evolution and context-dependency of genetic effects on gene expression levels
- First Published October 13, 2022
Method
A model-based constrained deep learning clustering approach for spatially resolved single-cell data
- First Published October 5, 2022
Research
C. elegans short tandem repeats" > Natural variation in C. elegans short tandem repeats
- First Published October 4, 2022
Research
Functional characterization of enhancer activity during a long terminal repeat's evolution
- First Published October 3, 2022
Method
Target-enriched nanopore sequencing and de novo assembly reveals co-occurrences of complex on-target genomic rearrangements induced by CRISPR-Cas9 in human cells
- First Published September 30, 2022
Research
Physiological intron retaining transcripts in the cytoplasm abound during human motor neurogenesis
- First Published September 30, 2022
Resource
A high-resolution map of small-scale inversions in the gibbon genome
- First Published September 30, 2022
RECOMB 2022 Special/Methods
Learning probabilistic protein–DNA recognition codes from DNA-binding specificities using structural mappings
- First Published September 19, 2022
Research
Listeria monocytogenes genes supporting growth under standard laboratory cultivation conditions and during macrophage infection" > Listeria monocytogenes genes supporting growth under standard laboratory cultivation conditions and during macrophage infection
- First Published September 16, 2022
Research
A butterfly pan-genome reveals that a large amount of structural variation underlies the evolution of chromatin accessibility
- First Published September 15, 2022
Research
Widespread association of the Argonaute protein AGO2 with meiotic chromatin suggests a distinct nuclear function in mammalian male reproduction
- First Published September 15, 2022
Resource
The western redcedar genome reveals low genetic diversity in a self-compatible conifer
- First Published September 15, 2022
Research
Acanthamoeba castellanii genomes provide insights into Legionella pneumophila infection–related chromatin reorganization" > Chromosome-scale assemblies of Acanthamoeba castellanii genomes provide insights into Legionella pneumophila infection–related chromatin reorganization
- First Published September 15, 2022
Research
Identification of a transcriptional signature found in multiple models of ASD and related disorders
- First Published September 14, 2022
Method
Surveying mutation density patterns around specific genomic features
- First Published September 13, 2022
Method
Spatially resolved whole transcriptome profiling in human and mouse tissue using Digital Spatial Profiling
- First Published September 13, 2022
Method
Scalable and model-free detection of spatial patterns and colocalization
- First Published September 9, 2022
Corrigendum
Corrigendum: Human primitive brain displays negative mitochondrial-nuclear expression correlation of respiratory genes
- First Published August 25, 2022
Resource
dbEmbryo multi-omics database for analyses of synergistic regulation in early mammalian embryo development
- First Published August 17, 2022
Research
An atlas of fish genome evolution reveals delayed rediploidization following the teleost whole-genome duplication
- First Published August 12, 2022
Method
Deep sequencing of short capped RNAs reveals novel families of noncoding RNAs
- First Published August 12, 2022
Research
ceRNA crosstalk mediated by ncRNAs is a novel regulatory mechanism in fish sex determination and differentiation
- First Published August 12, 2022
Research
Genomic analyses of wild argali, domestic sheep, and their hybrids provide insights into chromosome evolution, phenotypic variation, and germplasm innovation
- First Published August 10, 2022
Research
Ruminant-specific retrotransposons shape regulatory evolution of bovine immunity
- First Published August 10, 2022
Research
Single-cell multi-omics of human preimplantation embryos shows susceptibility to glucocorticoids
- First Published August 10, 2022
RECOMB 2022 Special/Methods
Assembler artifacts include misassembly because of unsafe unitigs and underassembly because of bidirected graphs
- First Published July 27, 2022
Research
Coordination of zygotic genome activation entry and exit by H3K4me3 and H3K27me3 in porcine early embryos
- First Published July 22, 2022
Method
Identifying cell state–associated alternative splicing events and their coregulation
- First Published July 20, 2022
Research
Compartment-specific and ELAVL1-coordinated regulation of intronic polyadenylation isoforms by doxorubicin
- First Published July 20, 2022
Method
ATAC-STARR-seq reveals transcription factor–bound activators and silencers within chromatin-accessible regions of the human genome
- First Published July 20, 2022
Research
Transcriptome innovations in primates revealed by single-molecule long-read sequencing
- First Published July 15, 2022
Research
Cell cycle arrest explains the observed bulk 3D genomic alterations in response to long-term heat shock in K562 cells
- First Published July 14, 2022
Method
Haplotype and population structure inference using neural networks in whole-genome sequencing data
- First Published July 6, 2022
Method
Highly accurate quantification of allelic gene expression for population and disease genetics
- First Published July 6, 2022
Method
An efficient method to identify, date, and describe admixture events using haplotype information
- First Published July 6, 2022
RECOMB 2022 Special/Methods
Unsupervised cell functional annotation for single-cell RNA-seq
- First Published June 28, 2022
Research
Thousands of human mutation clusters are explained by short-range template switching
- First Published June 27, 2022
Research
High temporal resolution RNA-seq time course data reveals widespread synchronous activation between mammalian lncRNAs and neighboring protein-coding genes
- First Published June 27, 2022
Resource
KCNQ4" > Proactive functional classification of all possible missense single-nucleotide variants in KCNQ4
- First Published June 27, 2022
Corrigendum
Corrigendum: Enhancer–silencer transitions in the human genome
- First Published June 24, 2022
Corrigendum
Corrigendum: Precise genotyping of circular mobile elements from metagenomic data uncovers human-associated plasmids with recent common ancestors
- First Published June 24, 2022
Corrigendum
Corrigendum: NicE-C efficiently reveals open chromatin–associated chromosome interactions at high resolution
- First Published June 24, 2022
Corrigendum
Corrigendum: An association test of the spatial distribution of rare missense variants within protein structures identifies Alzheimer's disease–related patterns
- First Published June 24, 2022
RECOMB 2022 Special/Methods
Ultra-high-diversity factorizable libraries for efficient therapeutic discovery
- First Published June 23, 2022
Research
Genomic analysis of Rad26 and Rad1–Rad10 reveals differences in their dependence on Mediator and RNA polymerase II
- First Published June 23, 2022
Research
Somatic retrotransposition in the developing rhesus macaque brain
- First Published June 21, 2022
Method
Dynamic regulatory module networks for inference of cell type–specific transcriptional networks
- First Published June 15, 2022
Research
Extensive protein dosage compensation in aneuploid human cancers
- First Published June 14, 2022
Method
Polishing copy number variant calls on exome sequencing data via deep learning
- First Published June 13, 2022
Research
Diurnal and eating-associated microbial patterns revealed via high-frequency saliva sampling
- First Published June 10, 2022
Resource
Precision environmental health monitoring by longitudinal exposome and multi-omics profiling
- First Published June 6, 2022
Research
Snake venom gene expression is coordinated by novel regulatory architecture and the integration of multiple co-opted vertebrate pathways
- First Published June 1, 2022
Resource
cis-regulatory elements, tissue-specific expression, and alternative promoters in zebrafish" > Epigenomic analysis reveals prevalent contribution of transposable elements to cis-regulatory elements, tissue-specific expression, and alternative promoters in zebrafish
- First Published June 1, 2022
Research
Frequent somatic gene conversion as a mechanism for loss of heterozygosity in tumor suppressor genes
- First Published May 26, 2022
Research
Evolution of transcription factor binding through sequence variations and turnover of binding sites
- First Published May 26, 2022
Resource
Native RNA sequencing in fission yeast reveals frequent alternative splicing isoforms
- First Published May 26, 2022
Method
Profiling the quantitative occupancy of myriad transcription factors across conditions by modeling chromatin accessibility data
- First Published May 24, 2022
Research
TP53-inducible putative long noncoding RNAs encode functional polypeptides that suppress cell proliferation
- First Published May 24, 2022
RECOMB 2022 Special/Methods
Lossless indexing with counting de Bruijn graphs
- First Published May 24, 2022
Research
Rtt109 promotes nucleosome replacement ahead of the replication fork
- First Published May 24, 2022
Corrigendum
Corrigendum: Low-input RNase footprinting for simultaneous quantification of cytosolic and mitochondrial translation
- First Published May 11, 2022
Research
Rapid evolution and strain turnover in the infant gut microbiome
- First Published May 11, 2022
Method
Early embryonic mutations reveal dynamics of somatic and germ cell lineages in mice
- First Published May 9, 2022
Research
Drosophila" > Transposable element accumulation drives size differences among polymorphic Y Chromosomes in Drosophila
- First Published May 2, 2022
Research
Genetic, epigenetic, and environmental mechanisms govern allele-specific gene expression
- First Published May 2, 2022
Research
E. coli measured at single-base resolution" > Genome-wide promoter assembly in E. coli measured at single-base resolution
- First Published April 28, 2022
Method
A complete pedigree-based graph workflow for rare candidate variant analysis
- First Published April 28, 2022
Method
Precise genotyping of circular mobile elements from metagenomic data uncovers human-associated plasmids with recent common ancestors
- First Published April 12, 2022
Research
Relative contributions of sex hormones, sex chromosomes, and gonads to sex differences in tissue gene regulation
- First Published April 8, 2022
Research
Long-read sequencing of 111 rice genomes reveals significantly larger pan-genomes
- First Published April 8, 2022
Research
H3K36 dimethylation shapes the epigenetic interaction landscape by directing repressive chromatin modifications in embryonic stem cells
- First Published April 8, 2022
Method
Chromatin interaction–aware gene regulatory modeling with graph attention networks
- First Published April 8, 2022
Method
Variations in antibody repertoires correlate with vaccine responses
- First Published March 31, 2022
Perspective
Short arms of human acrocentric chromosomes and the completion of the human genome sequence
- First Published March 31, 2022
Research
The role of insulators and transcription in 3D chromatin organization of flies
- First Published March 30, 2022