Research
Characterizing cytosine methylation of polymorphic transposable element insertions using the human pangenome resources
- First Published May 14, 2026
Research
Lake Malawi cichlid pangenome graph reveals extensive structural variation driven by transposable elements
- First Published April 10, 2025
Method
MCHelper automatically curates transposable element libraries across eukaryotic species
- First Published December 9, 2024
Method
Ultrafast genome-wide inference of pairwise coalescence times
- First Published August 10, 2023
Research
Diversity, duplication, and genomic organization of homeobox genes in Lepidoptera
- First Published December 8, 2022
Research
The loss of heterochromatin is associated with multiscale three-dimensional genome reorganization and aberrant transcription during cellular senescence
- First Published June 17, 2021
Research
Global transcriptional activity dynamics reveal functional enhancer RNAs
- First Published October 23, 2018
Method
FIND: difFerential chromatin INteractions Detection using a spatial Poisson process
- First Published February 12, 2018
Resource
Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly
- First Published April 10, 2017
Method
Using reference-free compressed data structures to analyze sequencing reads from thousands of human genomes
- First Published December 16, 2016
Research
Genome-wide map of regulatory interactions in the human genome
- First Published September 16, 2014
Resource
Assemblathon 1: A competitive assessment of de novo short read assembly methods
- First Published September 16, 2011
Method
Revealing the genetic structure of a trait by sequencing a population under selection
- First Published March 21, 2011
Resource
SNP detection and genotyping from low-coverage sequencing data on multiple diploid samples
- First Published October 27, 2010
Methods
High definition profiling of mammalian DNA methylation by array capture and single molecule bisulfite sequencing
- First Published July 6, 2009
Resource
The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes
- First Published June 4, 2009
RESOURCE
EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates
- First Published November 24, 2008
Methods
High-resolution human core-promoter prediction with CoreBoost_HM
- First Published November 7, 2008
RESOURCE
Mapping short DNA sequencing reads and calling variants using mapping quality scores
- First Published August 19, 2008
LETTER
Genome-wide mapping and analysis of active promoters in mouse embryonic stem cells and adult organs
- First Published November 27, 2007
LETTER
The mouse genome: Experimental examination of gene predictions and transcriptional start sites
- First Published December 1, 2004
METHODS
GAZE: A Generic Framework for the Integration of Gene-Prediction Data by Dynamic Programming
- First Published September 1, 2002
LETTER
Comparative DNA Sequence Analysis of Mouse and Human Protocadherin Gene Clusters
- First Published March 1, 2001
LETTER
Alfresco—A Workbench for Comparative Genomic Sequence Analysis
- First Published August 1, 2000
LETTER
Comparative Analysis of Noncoding Regions of 77 Orthologous Mouse and Human Gene Pairs
- First Published September 1, 1999
PERSPECTIVE
Large-Scale Gene Expression Data Analysis: A New Challenge to Computational Biologists
- First Published August 1, 1999
