Research
Characterizing cytosine methylation of polymorphic transposable element insertions using the human pangenome resources
- First Published May 14, 2026
Research
Assessing DNA methylation detection for primary human tissue using Nanopore sequencing
- First Published March 7, 2025
Method
Phased nanopore assembly with Shasta and modular graph phasing with GFAse
- First Published April 16, 2024
Research
Gaps and complex structurally variant loci in phased genome assemblies
- First Published May 10, 2023
Method
A complete pedigree-based graph workflow for rare candidate variant analysis
- First Published April 28, 2022
Research
Positive selection in noncoding genomic regions of vocal learning birds is associated with genes implicated in vocal learning and speech functions in humans
- First Published October 19, 2021
Method
Chromosome assembly of large and complex genomes using multiple references
- First Published October 19, 2018
Method
Comparative Annotation Toolkit (CAT)—simultaneous clade and personal genome annotation
- First Published June 8, 2018
Research
Evaluating recovery potential of the northern white rhinoceros from cryopreserved somatic cells
- First Published May 24, 2018
Research
Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes
- First Published March 21, 2018
Method
Identifying cis-mediators for trans-eQTLs across many human tissues using genomic mediation analysis
- First Published October 11, 2017
Method
Co-expression networks reveal the tissue-specific regulation of transcription and splicing
- First Published October 11, 2017
Research
Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling
- First Published January 30, 2017
Resource
Alignathon: a competitive assessment of whole-genome alignment methods
- First Published October 1, 2014
Resource
Assemblathon 1: A competitive assessment of de novo short read assembly methods
- First Published September 16, 2011
Methods
Enredo and Pecan: Genome-wide mammalian consistency-based multiple alignment with paralogs
- First Published October 10, 2008
Methods
Genome-wide nucleotide-level mammalian ancestor reconstruction
- First Published October 10, 2008
ARTICLE
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
- First Published June 13, 2007
ARTICLE
Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome
- First Published December 12, 2005
LETTER
The Mouse Secretome: Functional Classification of the Proteins Secreted Into the Extracellular Environment
- First Published June 2, 2003
LETTER
Continued Discovery of Transcriptional Units Expressed in Cells of the Mouse Mononuclear Phagocyte Lineage
- First Published June 2, 2003
LETTER
Phosphoregulators: Protein Kinases and Protein Phosphatases of Mouse
- First Published June 2, 2003
LETTER
Identification and Analysis of Chromodomain-Containing Proteins Encoded in the Mouse Transcriptome
- First Published June 2, 2003
LETTER
Systematic Characterization of the Zinc-Finger-Containing Proteins in the Mouse Transcriptome
- First Published June 2, 2003
LETTER
Systematic Expression Profiling of the Mouse Transcriptome Using RIKEN cDNA Microarrays
- First Published June 2, 2003
RESOURCE
Development and Evaluation of an Automated Annotation Pipeline and cDNA Annotation System
- First Published June 2, 2003
ARTICLE
Targeting a Complex Transcriptome: The Construction of the Mouse Full-Length cDNA Encyclopedia
- First Published June 2, 2003
ARTICLE
Impact of Alternative Initiation, Splicing, and Termination on the Diversity of the mRNA Transcripts Encoded by the Mouse Transcriptome
- First Published June 2, 2003
ARTICLE
Identification of Putative Noncoding RNAs Among the RIKEN Mouse Full-Length cDNA Collection
- First Published June 2, 2003