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Your search for returned 224 results

RESOURCE

An effective model for natural selection in promoters

Michael M. Hoffman
Ewan Birney

First Published March 1, 2010

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De novo fragment assembly with short mate-paired reads: Does the read length matter?

Mark J. Chaisson
Dumitru Brinza
Pavel A. Pevzner

First Published December 3, 2008

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Dissecting the effects of mtDNA variations on complex traits using mouse conplastic strains

Xinhua Yu
Ulrike Gimsa
Lena Wester-Rosenlöf
Ellen Kanitz
Winfried Otten
Manfred Kunz
Saleh M. Ibrahim

First Published November 26, 2008

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Fast and flexible simulation of DNA sequence data

Gary K. Chen
Paul Marjoram
Jeffrey D. Wall

First Published November 24, 2008

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EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates

Albert J. Vilella
Jessica Severin
Abel Ureta-Vidal
Li Heng
Richard Durbin
Ewan Birney

First Published November 24, 2008

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Caenorhabditis elegans microRNA promoter activity" > Genome-scale spatiotemporal analysis of Caenorhabditis elegans microRNA promoter activity

Natalia J. Martinez
Maria C. Ow
John S. Reece-Hoyes
M. Inmaculada Barrasa
Victor R. Ambros
Albertha J.M. Walhout

First Published November 3, 2008

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A resource for the simultaneous high-resolution mapping of multiple quantitative trait loci in rats: The NIH heterogeneous stock

Martina Johannesson
Regina Lopez-Aumatell
Pernilla Stridh
Margarita Diez
Jonatan Tuncel
Gloria Blázquez Esther Martinez-Membrives Toni Cañete Elia Vicens-Costa Delyth Graham Richard R. Copley Polinka Hernandez-Pliego Amennai D. Beyeen Johan Öckinger Cristina Fernández-Santamaría Percio S. Gulko Max Brenner Adolf Tobeña Marc Guitart-Masip Lydia Giménez-Llort Anna Dominiczak Rikard Holmdahl Dominique Gauguier Tomas Olsson Richard Mott
... [+20 authors] ...,
William Valdar
Eva E. Redei
Alberto Fernández-Teruel
Jonathan Flint

First Published October 29, 2008

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Whole population, genome-wide mapping of hidden relatedness

Alexander Gusev
Jennifer K. Lowe
Markus Stoffel
Mark J. Daly
David Altshuler
Jan L. Breslow
Jeffrey M. Friedman
Itsik Pe'er

First Published October 29, 2008

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genBlastA: Enabling BLAST to identify homologous gene sequences

Rong She
Jeffrey S.-C. Chu
Ke Wang
Jian Pei
Nansheng Chen

First Published October 6, 2008

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Haplotype sorting using human fosmid clone end-sequence pairs

Jeffrey M. Kidd
Ze Cheng
Tina Graves
Bob Fulton
Richard K. Wilson
Evan E. Eichler

First Published October 3, 2008

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Arabidopsis thaliana with short reads" > Sequencing of natural strains of Arabidopsis thaliana with short reads

Stephan Ossowski
Korbinian Schneeberger
Richard M. Clark
Christa Lanz
Norman Warthmann
Detlef Weigel

First Published September 25, 2008

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Large-scale gene trapping in C57BL/6N mouse embryonic stem cells

Gwenn M. Hansen
Diane C. Markesich
Michael B. Burnett
Qichao Zhu
Karen M. Dionne
Lizabeth J. Richter
... [+1 authors] ...,
Richard H. Finnell
Arthur T. Sands
Brian P. Zambrowicz
Alejandro Abuin

First Published September 17, 2008

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Mapping short DNA sequencing reads and calling variants using mapping quality scores

Heng Li
Jue Ruan
Richard Durbin

First Published August 19, 2008

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An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs)

Vardhman K. Rakyan
Thomas A. Down
Natalie P. Thorne
Paul Flicek
Eugene Kulesha
Stefan Gräf Eleni M. Tomazou Liselotte Bäckdahl Nathan Johnson Marlis Herberth Kevin L. Howe David K. Jackson Marcos M. Miretti Heike Fiegler John C. Marioni Ewan Birney
... [+11 authors] ...,
Tim J.P. Hubbard
Nigel P. Carter
Simon Tavaré
Stephan Beck

First Published June 24, 2008

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Hylobates and Nomascus Gibbons by high-resolution synteny mapping" > Tracking the complex flow of chromosome rearrangements from the Hominoidea Ancestor to extant Hylobates and Nomascus Gibbons by high-resolution synteny mapping

Doriana Misceo
Oronzo Capozzi
Roberta Roberto
Maria P. Dell’Oglio
Mariano Rocchi
Roscoe Stanyon
Nicoletta Archidiacono

First Published June 13, 2008

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EagleView: A genome assembly viewer for next-generation sequencing technologies

Weichun Huang
Gabor Marth

First Published June 11, 2008

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C. savignyi genetic map and its integration with the reference sequence facilitates insights into chordate genome evolution" > The C. savignyi genetic map and its integration with the reference sequence facilitates insights into chordate genome evolution

Matthew M. Hill
Karl W. Broman
Elia Stupka
William C. Smith
Di Jiang
Arend Sidow

First Published June 2, 2008

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DupMasker: A tool for annotating primate segmental duplications" > DupMasker: A tool for annotating primate segmental duplications

Zhaoshi Jiang
Robert Hubley
Arian Smit
Evan E. Eichler

First Published May 23, 2008

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A novel DNA sequence database for analyzing human demographic history

Jeffrey D. Wall
Murray P. Cox
Fernando L. Mendez
August Woerner
Tesa Severson
Michael F. Hammer

First Published May 20, 2008

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A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach

Evgeny A. Glazov
Pauline A. Cottee
Wesley C. Barris
Robert J. Moore
Brian P. Dalrymple
Mark L. Tizard

First Published May 9, 2008

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Transcription factor and microRNA motif discovery: The Amadeus platform and a compendium of metazoan target sets

Chaim Linhart
Yonit Halperin
Ron Shamir

First Published April 14, 2008

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New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree

Tatiana M. Karafet
Fernando L. Mendez
Monica B. Meilerman
Peter A. Underhill
Stephen L. Zegura
Michael F. Hammer

First Published April 2, 2008

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Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

Daniel R. Zerbino
Ewan Birney

First Published March 18, 2008

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ALLPATHS: De novo assembly of whole-genome shotgun microreads

Jonathan Butler
Iain MacCallum
Michael Kleber
Ilya A. Shlyakhter
Matthew K. Belmonte
Eric S. Lander
Chad Nusbaum
David B. Jaffe

First Published March 13, 2008

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De novo bacterial genome sequencing: Millions of very short reads assembled on a desktop computer

David Hernandez
Patrice François
Laurent Farinelli
Magne Østerås
Jacques Schrenzel

First Published March 10, 2008

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WGAViewer: Software for genomic annotation of whole genome association studies

Dongliang Ge
Kunlin Zhang
Anna C. Need
Olivier Martin
Jacques Fellay
Thomas J. Urban
Amalio Telenti
David B. Goldstein

First Published February 6, 2008

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Mouse inter-subspecific consomic strains for genetic dissection of quantitative complex traits

Toyoyuki Takada
Akihiko Mita
Akiteru Maeno
Takahiro Sakai
Hiroshi Shitara
Yoshiaki Kikkawa
Kazuo Moriwaki
Hiromichi Yonekawa
Toshihiko Shiroishi

First Published February 6, 2008

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Mus m. musculus and Mus m. domesticus subspecies" > Mouse consomic strains: Exploiting genetic divergence between Mus m. musculus and Mus m. domesticus subspecies

Sona Gregorová
Petr Divina
Radka Storchova
Zdenek Trachtulec
Vladana Fotopulosova
Karen L. Svenson
Leah Rae Donahue
Beverly Paigen
Jiri Forejt

First Published February 6, 2008

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Development and application of a phylogenomic toolkit: Resolving the evolutionary history of Madagascar’s lemurs

Julie E. Horvath
David W. Weisrock
Stephanie L. Embry
Isabella Fiorentino
James P. Balhoff
Peter Kappeler
Gregory A. Wray
Huntington F. Willard
Anne D. Yoder

First Published February 1, 2008

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MAKER: An easy-to-use annotation pipeline designed for emerging model organism genomes

Brandi L. Cantarel
Ian Korf
Sofia M.C. Robb
Genis Parra
Eric Ross
Barry Moore
Carson Holt
Alejandro Sánchez Alvarado
Mark Yandell

First Published November 19, 2007

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A second-generation combined linkage–physical map of the human genome

Tara C. Matise
Fang Chen
Wenwei Chen
Francisco M. De La Vega
Mark Hansen
Chunsheng He Fiona C.L. Hyland Giulia C. Kennedy Xiangyang Kong
... [+4 authors] ...,
Sarah S. Murray
Janet S. Ziegle
William C.L. Stewart
Steven Buyske

First Published November 7, 2007

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28-Way vertebrate alignment and conservation track in the UCSC Genome Browser

Webb Miller
Kate Rosenbloom
Ross C. Hardison
Minmei Hou
James Taylor
Brian Raney Richard Burhans David C. King Robert Baertsch Daniel Blankenberg Sergei L. Kosakovsky Pond Anton Nekrutenko Belinda Giardine Robert S. Harris Svitlana Tyekucheva Mark Diekhans Thomas H. Pringle William J. Murphy Arthur Lesk George M. Weinstock Kerstin Lindblad-Toh Richard A. Gibbs
... [+17 authors] ...,
Eric S. Lander
Adam Siepel
David Haussler
W. James Kent

First Published November 5, 2007

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Comparative genome analysis across a kingdom of eukaryotic organisms: Specialization and diversification in the Fungi

Michael J. Cornell
Intikhab Alam
Darren M. Soanes
Han Min Wong
Cornelia Hedeler
Norman W. Paton
... [+1 authors] ...,
Magnus Rattray
Simon J. Hubbard
Nicholas J. Talbot
Stephen G. Oliver

First Published November 5, 2007

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Initial sequence and comparative analysis of the cat genome

Joan U. Pontius
James C. Mullikin
Douglas R. Smith
Kerstin Lindblad-Toh
Sante Gnerre
Michele Clamp Jean Chang Robert Stephens Beena Neelam Natalia Volfovsky Alejandro A. Schäffer Richa Agarwala Kristina Narfström William J. Murphy Urs Giger Alfred L. Roca Agostinho Antunes Marilyn Menotti-Raymond Naoya Yuhki Jill Pecon-Slattery
... [+15 authors] ...,
Warren E. Johnson
Guillaume Bourque
Glenn Tesler
Stephen J. O’Brien

First Published November 1, 2007

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Sequence-based estimation of minisatellite and microsatellite repeat variability

Matthieu Legendre
Nathalie Pochet
Theodore Pak
Kevin J. Verstrepen

First Published October 31, 2007

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SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing

Juliane C. Dohm
Claudio Lottaz
Tatiana Borodina
Heinz Himmelbauer

First Published October 1, 2007

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Islands of euchromatin-like sequence and expressed polymorphic sequences within the short arm of human chromosome 21

Robert Lyle
Paola Prandini
Kazutoyo Osoegawa
Boudewijn ten Hallers
Sean Humphray
Baoli Zhu Eduardo Eyras Robert Castelo Christine P. Bird Sarantos Gagos Carol Scott Antony Cox Samuel Deutsch Catherine Ucla Marc Cruts Sophie Dahoun Xinwei She Frederique Bena Sheng-Yue Wang Christine Van Broeckhoven Evan E. Eichler Roderic Guigo
... [+17 authors] ...,
Jane Rogers
Pieter J. de Jong
Alexandre Reymond
Stylianos E. Antonarakis

First Published September 25, 2007

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Drosophila melanogaster" > Temporal and spatial transcriptional profiles of aging in Drosophila melanogaster

Ming Zhan
Haruyoshi Yamaza
Yu Sun
Jason Sinclair
Huai Li
Sige Zou

First Published July 10, 2007

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Detecting genetic variation in microarray expression data

Jennifer A. Greenhall
Matthew A. Zapala
Mario Cáceres
Ondrej Libiger
Carrolee Barlow
Nicholas J. Schork
David J. Lockhart

First Published July 3, 2007

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Construction of a genome-scale structural map at single-nucleotide resolution

Jason A. Greenbaum
Bo Pang
Thomas D. Tullius

First Published June 13, 2007

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The ENCODEdb portal: Simplified access to ENCODE Consortium data

Laura L. Elnitski
Prachi Shah
R. Travis Moreland
Lowell Umayam
Tyra G. Wolfsberg
Andreas D. Baxevanis

First Published June 13, 2007

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A framework for collaborative analysis of ENCODE data: Making large-scale analyses biologist-friendly

Daniel Blankenberg
James Taylor
Ian Schenck
Jianbin He
Yi Zhang
Matthew Ghent Narayanan Veeraraghavan Istvan Albert
... [+3 authors] ...,
Webb Miller
Kateryna D. Makova
Ross C. Hardison
Anton Nekrutenko

First Published June 13, 2007

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RCPdb: An evolutionary classification and codon usage database for repeat-containing proteins

Noel G. Faux
Gavin A. Huttley
Khalid Mahmood
Geoffrey I. Webb
Maria Garcia de la Banda
James C. Whisstock

First Published June 13, 2007

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Systematic analysis of genetic alterations in tumors using Cancer Genome WorkBench (CGWB)

Jinghui Zhang
Richard P. Finney
William Rowe
Michael Edmonson
Sei Hoon Yang
Tatiana Dracheva
Jin Jen
Jeffery P. Struewing
Kenneth H. Buetow

First Published May 24, 2007

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PolyScan: An automatic indel and SNP detection approach to the analysis of human resequencing data

Ken Chen
Michael D. McLellan
Li Ding
Michael C. Wendl
Yumi Kasai
Richard K. Wilson
Elaine R. Mardis

First Published April 6, 2007

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E. coli by combining improved genome context methods: Comparison with high-throughput experimental data" > Inferring genome-wide functional linkages in E. coli by combining improved genome context methods: Comparison with high-throughput experimental data

Sailu Yellaboina
Kshama Goyal
Shekhar C. Mande

First Published March 5, 2007

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Saccharomyces cerevisiae" > Approaching a complete repository of sequence-verified protein-encoding clones for Saccharomyces cerevisiae

Yanhui Hu
Andreas Rolfs
Bhupinder Bhullar
Tellamraju V. S. Murthy
Cong Zhu
Michael F. Berger Anamaria A. Camargo Fontina Kelley Seamus McCarron Daniel Jepson Aaron Richardson Jacob Raphael Donna Moreira Elena Taycher Dongmei Zuo Stephanie Mohr Michael F. Kane Janice Williamson Andrew Simpson Martha L. Bulyk
... [+15 authors] ...,
Edward Harlow
Gerald Marsischky
Richard D. Kolodner
Joshua LaBaer

First Published February 23, 2007

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A meiotic linkage map of the silver fox, aligned and compared to the canine genome

Anna V. Kukekova
Lyudmila N. Trut
Irina N. Oskina
Jennifer L. Johnson
Svetlana V. Temnykh
Anastasiya V. Kharlamova Darya V. Shepeleva Rimma G. Gulievich
... [+3 authors] ...,
Svetlana G. Shikhevich
Alexander S. Graphodatsky
Gustavo D. Aguirre
Gregory M. Acland

First Published February 6, 2007

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MEGAN analysis of metagenomic data

Daniel H. Huson
Alexander F. Auch
Ji Qi
Stephan C. Schuster

First Published January 25, 2007

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Molecular refinement of gibbon genome rearrangements

Roberta Roberto
Oronzo Capozzi
Richard K. Wilson
Elaine R. Mardis
Mariana Lomiento
Eray Tuzun Ze Cheng
... [+2 authors] ...,
Alan R. Mootnick
Nicoletta Archidiacono
Mariano Rocchi
Evan E. Eichler

First Published December 21, 2006

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Exploring genomic dark matter: A critical assessment of the performance of homology search methods on noncoding RNA

Eva K. Freyhult
Jonathan P. Bollback
Paul P. Gardner

First Published December 6, 2006

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ProtoBee: Hierarchical classification and annotation of the honey bee proteome

Noam Kaplan
Michal Linial

First Published October 25, 2006

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An initial map of insertion and deletion (INDEL) variation in the human genome

Ryan E. Mills
Christopher T. Luttig
Christine E. Larkins
Adam Beauchamp
Circe Tsui
W. Stephen Pittard
Scott E. Devine

First Published August 10, 2006

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A molecular-properties-based approach to understanding PDZ domain proteins and PDZ ligands

Cosmas Giallourakis
Zhifang Cao
Todd Green
Heather Wachtel
Xiaohui Xie
Marco Lopez-Illasaca
Mark Daly
John Rioux
Ramnik Xavier

First Published July 6, 2006

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Xenopus laevis and Xenopus tropicalis reveals post-tetraploidization transcriptome remodeling" > Sequencing and analysis of 10,967 full-length cDNA clones from Xenopus laevis and Xenopus tropicalis reveals post-tetraploidization transcriptome remodeling

Ryan D. Morin
Elbert Chang
Anca Petrescu
Nancy Liao
Malachi Griffith
Robert Kirkpatrick Yaron S. Butterfield Alice C. Young Jeffrey Stott Sarah Barber Ryan Babakaiff Mark C. Dickson Corey Matsuo David Wong George S. Yang Duane E. Smailus Keith D. Wetherby Peggy N. Kwong Jane Grimwood Charles P. Brinkley Mabel Brown-John Natalie D. Reddix-Dugue Michael Mayo Jeremy Schmutz Jaclyn Beland Morgan Park Susan Gibson Teika Olson Gerard G. Bouffard Miranda Tsai Ruth Featherstone Steve Chand Asim S. Siddiqui Wonhee Jang Ed Lee Steven L. Klein Robert W. Blakesley Barry R. Zeeberg Sudarshan Narasimhan John N. Weinstein Christa Prange Pennacchio Richard M. Myers Eric D. Green Lukas Wagner
... [+39 authors] ...,
Daniela S. Gerhard
Marco A. Marra
Steven J.M. Jones
Robert A. Holt

First Published May 3, 2006

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Iterative gene prediction and pseudogene removal improves genome annotation

Marijke J. van Baren
Michael R. Brent

First Published May 1, 2006

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Escherichia coli K-12" > Large-scale identification of protein–protein interaction of Escherichia coli K-12

Mohammad Arifuzzaman
Maki Maeda
Aya Itoh
Kensaku Nishikata
Chiharu Takita
Rintaro Saito Takeshi Ara Kenji Nakahigashi Hsuan-Cheng Huang Aki Hirai Kohei Tsuzuki Seira Nakamura Mohammad Altaf-Ul-Amin Taku Oshima Tomoya Baba Natsuko Yamamoto Tomoyo Kawamura Tomoko Ioka-Nakamichi Masanari Kitagawa
... [+14 authors] ...,
Masaru Tomita
Shigehiko Kanaya
Chieko Wada
Hirotada Mori

First Published April 10, 2006

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A comprehensive catalog of human KRAB-associated zinc finger genes: Insights into the evolutionary history of a large family of transcriptional repressors

Stuart Huntley
Daniel M. Baggott
Aaron T. Hamilton
Mary Tran-Gyamfi
Shan Yang
Joomyeong Kim
Laurie Gordon
Elbert Branscomb
Lisa Stubbs

First Published April 10, 2006

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An isochore map of human chromosomes

Maria Costantini
Oliver Clay
Fabio Auletta
Giorgio Bernardi

First Published April 3, 2006

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Plasmodium falciparum interactome reveals protein function on a genome-wide scale" > Computational modeling of the Plasmodium falciparum interactome reveals protein function on a genome-wide scale

Shailesh V. Date
Christian J. Stoeckert

First Published March 6, 2006

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GeneDesign: Rapid, automated design of multikilobase synthetic genes

Sarah M. Richardson
Sarah J. Wheelan
Robert M. Yarrington
Jef D. Boeke

First Published February 15, 2006

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A global assembly of cotton ESTs

Joshua A. Udall
Jordan M. Swanson
Karl Haller
Ryan A. Rapp
Michael E. Sparks
Jamie Hatfield Yeisoo Yu Yingru Wu Caitriona Dowd Aladdin B. Arpat Brad A. Sickler Thea A. Wilkins Jin Ying Guo Xiao Ya Chen Jodi Scheffler Earl Taliercio Ricky Turley Helen McFadden Paxton Payton Natalya Klueva Randell Allen Deshui Zhang Candace Haigler Curtis Wilkerson Jinfeng Suo Stefan R. Schulze Margaret L. Pierce Margaret Essenberg HyeRan Kim Danny J. Llewellyn Elizabeth S. Dennis David Kudrna
... [+27 authors] ...,
Rod Wing
Andrew H. Paterson
Cari Soderlund
Jonathan F. Wendel

First Published February 14, 2006

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Utilization of a whole genome SNP panel for efficient genetic mapping in the mouse

Jennifer L. Moran
Andrew D. Bolton
Pamela V. Tran
Alison Brown
Noelle D. Dwyer
Danielle K. Manning Bryan C. Bjork Cheng Li Kate Montgomery Sandra M. Siepka Martha Hotz Vitaterna Joseph S. Takahashi
... [+7 authors] ...,
Tim Wiltshire
David J. Kwiatkowski
Raju Kucherlapati
David R. Beier

First Published February 3, 2006

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Ciona intestinalis" > Chromosomal mapping of 170 BAC clones in the ascidian Ciona intestinalis

Eiichi Shoguchi
Takeshi Kawashima
Yutaka Satou
Makoto Hamaguchi
Tadasu Sin-I
Yuji Kohara
Nik Putnam
Daniel S. Rokhsar
Nori Satoh

First Published December 14, 2005

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Oryza bacterial artificial chromosome library resource: Construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza" > The Oryza bacterial artificial chromosome library resource: Construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza

Jetty S.S. Ammiraju
Meizhong Luo
José L. Goicoechea
Wenming Wang
Dave Kudrna
Christopher Mueller Jayson Talag HyeRan Kim Nicholas B. Sisneros Barbara Blackmon Eric Fang Jeffery B. Tomkins Darshan Brar David MacKill Susan McCouch Nori Kurata Georgina Lambert David W. Galbraith K. Arumuganathan Kiran Rao Jason G. Walling Navdeep Gill Yeisoo Yu
... [+18 authors] ...,
Phillip SanMiguel
Carol Soderlund
Scott Jackson
Rod A. Wing

First Published December 12, 2005

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The International HapMap Project Web site

Gudmundur A. Thorisson
Albert V. Smith
Lalitha Krishnan
Lincoln D. Stein

First Published October 26, 2005

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Inference and analysis of haplotypes from combined genotyping studies deposited in dbSNP

Noah A. Zaitlen
Hyun Min Kang
Michael L. Feolo
Stephen T. Sherry
Eran Halperin
Eleazar Eskin

First Published October 26, 2005

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The Yeast Gene Order Browser: Combining curated homology and syntenic context reveals gene fate in polyploid species

Kevin P. Byrne
Kenneth H. Wolfe

First Published September 16, 2005

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Galaxy: A platform for interactive large-scale genome analysis

Belinda Giardine
Cathy Riemer
Ross C. Hardison
Richard Burhans
Laura Elnitski
Prachi Shah Yi Zhang Daniel Blankenberg Istvan Albert
... [+4 authors] ...,
James Taylor
Webb Miller
W. James Kent
Anton Nekrutenko

First Published September 16, 2005

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The zebrafish gene map defines ancestral vertebrate chromosomes

Ian G. Woods
Catherine Wilson
Brian Friedlander
Patricia Chang
Daengnoy K. Reyes
Rebecca Nix
... [+1 authors] ...,
Peter D. Kelly
Felicia Chu
John H. Postlethwait
William S. Talbot

First Published August 18, 2005

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The MicrobesOnline Web site for comparative genomics

Eric J. Alm
Katherine H. Huang
Morgan N. Price
Richard P. Koche
Keith Keller
Inna L. Dubchak
Adam P. Arkin

First Published July 5, 2005

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An atlas of human gene expression from massively parallel signature sequencing (MPSS)

C. Victor Jongeneel
Mauro Delorenzi
Christian Iseli
Daixing Zhou
Christian D. Haudenschild
Irina Khrebtukova Dmitry Kuznetsov
... [+2 authors] ...,
Brian J. Stevenson
Robert L. Strausberg
Andrew J.G. Simpson
Thomas J. Vasicek

First Published July 5, 2005

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Drosophila buzzatii genome" > A BAC-based physical map of the Drosophila buzzatii genome

Josefa González
Michael Nefedov
Ian Bosdet
Ferran Casals
Oriol Calvete
Alejandra Delprat Heesun Shin Readman Chiu Carrie Mathewson Natasja Wye
... [+5 authors] ...,
Roger A. Hoskins
Jacqueline E. Schein
Pieter de Jong
Alfredo Ruiz

First Published June 1, 2005

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A. gambiae functional genomics" > AnoEST: Toward A. gambiae functional genomics

Evgenia V. Kriventseva
Anastasios C. Koutsos
Claudia Blass
Fotis C. Kafatos
George K. Christophides
Evgeny M. Zdobnov

First Published May 17, 2005

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Begin at the beginning: Predicting genes with 5′ UTRs

Randall H. Brown
Samuel S. Gross
Michael R. Brent

First Published May 2, 2005

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Genome-wide assembly and analysis of alternative transcripts in mouse

Alexei A. Sharov
Dawood B. Dudekula
Minoru S.H. Ko

First Published May 2, 2005

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Exploring relationships and mining data with the UCSC Gene Sorter

W.J. Kent
Fan Hsu
Donna Karolchik
Robert M. Kuhn
Hiram Clawson
Heather Trumbower
David Haussler

First Published May 2, 2005

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C. elegans ORFeome by cloning TWINSCAN predictions" > Closing in on the C. elegans ORFeome by cloning TWINSCAN predictions

Chaochun Wei
Philippe Lamesch
Manimozhiyan Arumugam
Jennifer Rosenberg
Ping Hu
Marc Vidal
Michael R. Brent

First Published April 1, 2005

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CADLIVE dynamic simulator: Direct link of biochemical networks to dynamic models

Hiroyuki Kurata
Kouichi Masaki
Yoshiyuki Sumida
Rei Iwasaki

First Published April 1, 2005

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5-luxCDABE mutant library in Pseudomonas aeruginosa PAO1: A tool for identifying differentially regulated genes" > Construction of a mini-Tn5-luxCDABE mutant library in Pseudomonas aeruginosa PAO1: A tool for identifying differentially regulated genes

Shawn Lewenza
Reza K. Falsafi
Geoff Winsor
W. James Gooderham
Joseph B. McPhee
Fiona S.L. Brinkman
Robert E.W. Hancock

First Published April 1, 2005

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Database of mRNA gene expression profiles of multiple human organs

Chang Gue Son
Sven Bilke
Sean Davis
Braden T. Greer
Jun S. Wei
Craig C. Whiteford
Qing-Rong Chen
Nicola Cenacchi
Javed Khan

First Published March 1, 2005

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novoSNP, a novel computational tool for sequence variation discovery

Stefan Weckx
Jurgen Del-Favero
Rosa Rademakers
Lieve Claes
Marc Cruts
Peter De Jonghe
Christine Van Broeckhoven
Peter De Rijk

First Published March 1, 2005

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ProbCons: Probabilistic consistency-based multiple sequence alignment

Chuong B. Do
Mahathi S.P. Mahabhashyam
Michael Brudno
Serafim Batzoglou

First Published February 1, 2005

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EAnnot: A genome annotation tool using experimental evidence

Li Ding
Aniko Sabo
Nicolas Berkowicz
Rekha R. Meyer
Yoram Shotland
Mark R. Johnson
Kymberlie H. Pepin
Richard K. Wilson
John Spieth

First Published December 1, 2004

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OptStrain: A computational framework for redesign of microbial production systems

Priti Pharkya
Anthony P. Burgard
Costas D. Maranas

First Published November 1, 2004

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Arabidopsis Functional Genomics: Transcript Profiling and Reverse Genetics Applications" > Versatile Gene-Specific Sequence Tags for Arabidopsis Functional Genomics: Transcript Profiling and Reverse Genetics Applications

Pierre Hilson
Joke Allemeersch
Thomas Altmann
Sébastien Aubourg
Alexandra Avon
Jim Beynon Rishikesh P. Bhalerao Frédérique Bitton Michel Caboche Bernard Cannoot Vasil Chardakov Cécile Cognet-Holliger Vincent Colot Mark Crowe Caroline Darimont Steffen Durinck Holger Eickhoff Andéol Falcon de Longevialle Edward E. Farmer Murray Grant Martin T.R. Kuiper Hans Lehrach Céline Léon Antonio Leyva Joakim Lundeberg Claire Lurin Yves Moreau Wilfried Nietfeld Javier Paz-Ares Philippe Reymond Pierre Rouzé Goran Sandberg Maria Dolores Segura Carine Serizet Alexandra Tabrett Ludivine Taconnat Vincent Thareau Paul Van Hummelen Steven Vercruysse Marnik Vuylsteke Magdalena Weingartner Peter J. Weisbeek
... [+37 authors] ...,
Valtteri Wirta
Floyd R.A. Wittink
Marc Zabeau
Ian Small

First Published October 15, 2004

RESOURCE

Pseudomonas aeruginosa PA01 Gene Collection" > The Pseudomonas aeruginosa PA01 Gene Collection

Joshua LaBaer
QingQing Qiu
Anukanth Anumanthan
Wenhong Mar
Dongmei Zuo
T.V.S. Murthy Helen Taycher
... [+2 authors] ...,
Allison Halleck
Eugenie Hainsworth
Stephen Lory
Leonardo Brizuela

First Published October 15, 2004

RESOURCE

From ORFeome to Biology: A Functional Genomics Pipeline

Stefan Wiemann
Dorit Arlt
Wolfgang Huber
Ruth Wellenreuther
Simone Schleeger
Alexander Mehrle Stephanie Bechtel Mamatha Sauermann
... [+3 authors] ...,
Ulrike Korf
Rainer Pepperkok
Holger Sültmann
Annemarie Poustka

First Published October 15, 2004

RESOURCE

High-Throughput Computational and Experimental Techniques in Structural Genomics

Mark R. Chance
Andras Fiser
Andrej Sali
Ursula Pieper
Narayanan Eswar
Guiping Xu
J. Eduardo Fajardo
Thirumuruhan Radhakannan
Nebojsa Marinkovic

First Published October 15, 2004

RESOURCE

The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)

First Published October 15, 2004

RESOURCE

Caenorhabditis elegans Promoterome" > A First Version of the Caenorhabditis elegans Promoterome

Denis Dupuy
Qian-Ru Li
Bart Deplancke
Mike Boxem
Tong Hao
Philippe Lamesch Reynaldo Sequerra Stephanie Bosak Lynn Doucette-Stamm
... [+4 authors] ...,
Ian A. Hope
David E. Hill
Albertha J.M. Walhout
Marc Vidal

First Published October 15, 2004

RESOURCE

Human ORFeome Version 1.1: A Platform for Reverse Proteomics

Jean-François Rual
Tomoko Hirozane-Kishikawa
Tong Hao
Nicolas Bertin
Siming Li
Amélie Dricot Ning Li Jennifer Rosenberg Philippe Lamesch Pierre-Olivier Vidalain Tracey R. Clingingsmith James L. Hartley Dominic Esposito David Cheo Troy Moore Blake Simmons Reynaldo Sequerra Stephanie Bosak Lynn Doucette-Stamm Christian Le Peuch Jean Vandenhaute
... [+16 authors] ...,
Michael E. Cusick
Joanna S. Albala
David E. Hill
Marc Vidal

First Published October 15, 2004

RESOURCE

Brucella melitensis ORFeome Version 1.1" > Generation of the Brucella melitensis ORFeome Version 1.1

Amélie Dricot
Jean-François Rual
Philippe Lamesch
Nicolas Bertin
Denis Dupuy
Tong Hao Christophe Lambert Régis Hallez Jean-Marc Delroisse Jean Vandenhaute Ignacio Lopez-Goñi Ignacio Moriyon Juan M. Garcia-Lobo Félix J. Sangari Alastair P. MacMillan Sally J. Cutler Adrian M. Whatmore Stephanie Bozak Reynaldo Sequerra Lynn Doucette-Stamm
... [+15 authors] ...,
Marc Vidal
David E. Hill
Jean-Jacques Letesson
Xavier De Bolle

First Published October 15, 2004

RESOURCE

Caenorhabditis elegans Phenome Mapping With an ORFeome-Based RNAi Library" > Toward Improving Caenorhabditis elegans Phenome Mapping With an ORFeome-Based RNAi Library

Jean-François Rual
Julian Ceron
John Koreth
Tong Hao
Anne-Sophie Nicot
Tomoko Hirozane-Kishikawa Jean Vandenhaute
... [+2 authors] ...,
Stuart H. Orkin
David E. Hill
Sander van den Heuvel
Marc Vidal

First Published October 15, 2004

RESOURCE

C. elegans ORFeome" > WormBase as an Integrated Platform for the C. elegans ORFeome

Nansheng Chen
Daniel Lawson
Keith Bradnam
Todd W. Harris
Lincoln D. Stein

First Published October 15, 2004

RESOURCE

A Comprehensive Genetic Map of the Cattle Genome Based on 3802 Microsatellites

Naoya Ihara
Akiko Takasuga
Kazunori Mizoshita
Haruko Takeda
Mayumi Sugimoto
Yasushi Mizoguchi Takashi Hirano Tomohito Itoh Toshio Watanabe Kent M. Reed Warren M. Snelling
... [+6 authors] ...,
Steven M. Kappes
Craig W. Beattie
Gary L. Bennett
Yoshikazu Sugimoto

First Published October 1, 2004

RESOURCE

Large-Scale Mutagenesis of the Yeast Genome Using a Tn7-Derived Multipurpose Transposon

Anuj Kumar
Michael Seringhaus
Matthew C. Biery
Robert J. Sarnovsky
Lara Umansky
Stacy Piccirillo Matthew Heidtman Kei-Hoi Cheung
... [+3 authors] ...,
Craig J. Dobry
Mark B. Gerstein
Nancy L. Craig
Michael Snyder

First Published October 1, 2004

RESOURCE

Indica and Japonica Genome Alignments" > An SNP Resource for Rice Genetics and Breeding Based on Subspecies Indica and Japonica Genome Alignments

F. Alex Feltus
Jun Wan
Stefan R. Schulze
James C. Estill
Ning Jiang
Andrew H. Paterson

First Published September 1, 2004

RESOURCE

An Efficient SNP System for Mouse Genome Scanning and Elucidating Strain Relationships

Petko M. Petkov
Yueming Ding
Megan A. Cassell
Weidong Zhang
Gunjan Wagner
Evelyn E. Sargent Steven Asquith Victor Crew
... [+3 authors] ...,
Kevin A. Johnson
Phil Robinson
Valerie E. Scott
Michael V. Wiles

First Published September 1, 2004

RESOURCE

cpnDB: A Chaperonin Sequence Database

Janet E. Hill
Susanne L. Penny
Kenneth G. Crowell
Swee Han Goh
Sean M. Hemmingsen

First Published August 2, 2004

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