RESOURCE

A resource for the simultaneous high-resolution mapping of multiple quantitative trait loci in rats: The NIH heterogeneous stock

    • 1 Wellcome Trust Centre for Human Genetics, Oxford OX3 7BN, United Kingdom;
    • 2 Medical Psychology Unit, Department of Psychiatry & Forensic Medicine, Institute of Neurosciences, School of Medicine, Autonomous University of Barcelona, 08193-Bellaterra, Barcelona, Spain;
    • 3 Neuroimmunology Unit, Department of Clinical Neuroscience, Karolinska Institutet CMM, Karolinska University Hospital, 171 76 Stockholm, Sweden;
    • 4 Section for Medical Inflammation Research, Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden;
    • 5 BHF Glasgow Cardiovascular Research Centre, Faculty of Medicine, University of Glasgow, Glasgow G12 8TA, United Kingdom;
    • 6 Laboratory of Experimental Rheumatology, Center for Genomics and Human Genetics, The Feinstein Institute for Medical Research, Manhasset, New York 11030, USA;
    • 7 Northwestern University Feinberg School of Medicine, The Asher Center, Department of Psychiatry and Behavioral Sciences, Chicago, Illinois 60611, USA
Published October 29, 2008. Vol 19 Issue 1, pp. 150-158. https://doi.org/10.1101/gr.081497.108
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Abstract

The laboratory rat (Rattus norvegicus) is a key tool for the study of medicine and pharmacology for human health. A large database of phenotypes for integrated fields such as cardiovascular, neuroscience, and exercise physiology exists in the literature. However, the molecular characterization of the genetic loci that give rise to variation in these traits has proven to be difficult. Here we show how one obstacle to progress, the fine-mapping of quantitative trait loci (QTL), can be overcome by using an outbred population of rats. By use of a genetically heterogeneous stock of rats, we map a locus contributing to variation in a fear-related measure (two-way active avoidance in the shuttle box) to a region on chromosome 5 containing nine genes. By establishing a protocol measuring multiple phenotypes including immunology, neuroinflammation, and hematology, as well as cardiovascular, metabolic, and behavioral traits, we establish the rat HS as a new resource for the fine-mapping of QTLs contributing to variation in complex traits of biomedical relevance.

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