Table of Contents

April 2022; 32 (4)

In memoriam

  • Haig H. Kazazian, Jr. (1937–2022)

    • Stylianos E. Antonarakis and
    • Stuart H. Orkin
    Genome Res. April 2022 32: v-vi; Published in Advance March 21, 2022, doi:10.1101/gr.276712.122
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Commentary

  • Implications of the first complete human genome assembly

    Genome Res. April 2022 32: 595-598; Published in Advance March 31, 2022, doi:10.1101/gr.276723.122
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Perspectives

  • Short arms of human acrocentric chromosomes and the completion of the human genome sequence

    • Stylianos E. Antonarakis
    Genome Res. April 2022 32: 599-607; Published in Advance March 31, 2022, doi:10.1101/gr.275350.121

  • The genetics and epigenetics of satellite centromeres

    • Paul B. Talbert and
    • Steven Henikoff
    Genome Res. April 2022 32: 608-615; Published in Advance March 31, 2022, doi:10.1101/gr.275351.121
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Research

  • Chromosome-specific telomere lengths and the minimal functional telomere revealed by nanopore sequencing

    • Samantha L. Sholes,
    • Kayarash Karimian,
    • Ariel Gershman,
    • Thomas J. Kelly,
    • Winston Timp,
    • and Carol W. Greider
    Genome Res. April 2022 32: 616-628; Published in Advance October 26, 2021, doi:10.1101/gr.275868.121

  • MYC overexpression leads to increased chromatin interactions at super-enhancers and MYC binding sites

    • Yi Xiang See,
    • Kaijing Chen,
    • and Melissa J. Fullwood
    Genome Res. April 2022 32: 629-642; Published in Advance February 3, 2022, doi:10.1101/gr.276313.121
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  • Somatic structural variant formation is guided by and influences genome architecture

    • Nikos Sidiropoulos,
    • Balca R. Mardin,
    • F. Germán Rodríguez-González,
    • Ivan D. Bochkov,
    • Shilpa Garg,
    • Adrian M. Stütz,
    • Jan O. Korbel,
    • Erez Lieberman Aiden,
    • and Joachim Weischenfeldt
    Genome Res. April 2022 32: 643-655; Published in Advance February 17, 2022, doi:10.1101/gr.275790.121
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  • A hidden layer of structural variation in transposable elements reveals potential genetic modifiers in human disease-risk loci

    • Elisabeth J. van Bree,
    • Rita L.F.P. Guimarães,
    • Mischa Lundberg,
    • Elena R. Blujdea,
    • Jimi L. Rosenkrantz,
    • Fred T.G. White,
    • Josse Poppinga,
    • Paula Ferrer-Raventós,
    • Anne-Fleur E. Schneider,
    • Isabella Clayton,
    • David Haussler,
    • Marcel J.T. Reinders,
    • Henne Holstege,
    • Adam D. Ewing,
    • Colette Moses,
    • and Frank M.J. Jacobs
    Genome Res. April 2022 32: 656-670; Published in Advance March 24, 2022, doi:10.1101/gr.275515.121
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  • Accumulation and ineffective silencing of transposable elements on an avian W Chromosome

    • Vera M. Warmuth,
    • Matthias H. Weissensteiner,
    • and Jochen B.W. Wolf
    Genome Res. April 2022 32: 671-681; Published in Advance February 11, 2022, doi:10.1101/gr.275465.121

  • The role of insulators and transcription in 3D chromatin organization of flies

    • Keerthi T. Chathoth,
    • Liudmila A. Mikheeva,
    • Gilles Crevel,
    • Jareth C. Wolfe,
    • Ioni Hunter,
    • Saskia Beckett-Doyle,
    • Sue Cotterill,
    • Hongsheng Dai,
    • Andrew Harrison,
    • and Nicolae Radu Zabet
    Genome Res. April 2022 32: 682-698; Published in Advance March 30, 2022, doi:10.1101/gr.275809.121
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  • GC content, but not nucleosome positioning, directly contributes to intron splicing efficiency in Paramecium

    • Stefano Gnan,
    • Mélody Matelot,
    • Marion Weiman,
    • Olivier Arnaiz,
    • Frédéric Guérin,
    • Linda Sperling,
    • Mireille Bétermier,
    • Claude Thermes,
    • Chun-Long Chen,
    • and Sandra Duharcourt
    Genome Res. April 2022 32: 699-709; Published in Advance March 9, 2022, doi:10.1101/gr.276125.121

  • Broad domains of histone marks in the highly compact Paramecium macronuclear genome

    • Franziska Drews,
    • Abdulrahman Salhab,
    • Sivarajan Karunanithi,
    • Miriam Cheaib,
    • Martin Jung,
    • Marcel H. Schulz,
    • and Martin Simon
    Genome Res. April 2022 32: 710-725; Published in Advance March 9, 2022, doi:10.1101/gr.276126.121

Methods

  • Sequencing of individual barcoded cDNAs using Pacific Biosciences and Oxford Nanopore Technologies reveals platform-specific error patterns

    • Alla Mikheenko,
    • Andrey D. Prjibelski,
    • Anoushka Joglekar,
    • and Hagen U. Tilgner
    Genome Res. April 2022 32: 726-737; Published in Advance March 17, 2022, doi:10.1101/gr.276405.121
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  • Pan-human consensus genome significantly improves the accuracy of RNA-seq analyses

    • Benjamin Kaminow,
    • Sara Ballouz,
    • Jesse Gillis,
    • and Alexander Dobin
    Genome Res. April 2022 32: 738-749; Published in Advance March 7, 2022, doi:10.1101/gr.275613.121
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  • Identification of phenotype-specific networks from paired gene expression–cell shape imaging data

    • Charlie George Barker,
    • Eirini Petsalaki,
    • Girolamo Giudice,
    • Julia Sero,
    • Emmanuel Nsa Ekpenyong,
    • Chris Bakal,
    • and Evangelia Petsalaki
    Genome Res. April 2022 32: 750-765; Published in Advance February 23, 2022, doi:10.1101/gr.276059.121
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  • A framework to score the effects of structural variants in health and disease

    • Philip Kleinert and
    • Martin Kircher
    Genome Res. April 2022 32: 766-777; Published in Advance February 23, 2022, doi:10.1101/gr.275995.121
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  • An association test of the spatial distribution of rare missense variants within protein structures identifies Alzheimer's disease–related patterns

    • Bowen Jin,
    • John A. Capra,
    • Penelope Benchek,
    • Nicholas Wheeler,
    • Adam C. Naj,
    • Kara L. Hamilton-Nelson,
    • John J. Farrell,
    • Yuk Yee Leung,
    • Brian Kunkle,
    • Badri Vadarajan,
    • Gerard D. Schellenberg,
    • Richard Mayeux,
    • Li-San Wang,
    • Lindsay A. Farrer,
    • Margaret A. Pericak-Vance,
    • Eden R. Martin,
    • Jonathan L. Haines,
    • Dana C. Crawford,
    • and William S. Bush
    Genome Res. April 2022 32: 778-790; Published in Advance February 24, 2022, doi:10.1101/gr.276069.121
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  • Variations in antibody repertoires correlate with vaccine responses

    • Yana Safonova,
    • Sung Bong Shin,
    • Luke Kramer,
    • James Reecy,
    • Corey T. Watson,
    • Timothy P.L. Smith,
    • and Pavel A. Pevzner
    Genome Res. April 2022 32: 791-804; Published in Advance March 31, 2022, doi:10.1101/gr.276027.121

Erratum

  • Erratum: Genome biology of the darkedged splitfin, Girardinichthys multiradiatus, and the evolution of sex chromosomes and placentation

    Genome Res. April 2022 32: 805; doi:10.1101/gr.276732.122
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This Issue

April 2022; 32 (4)
Cover
  1. In memoriam
  2. Commentary
  3. Perspectives
  4. Research
  5. Methods
  6. Erratum

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